miRNA display CGI


Results 61 - 80 of 230 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23256 3' -64.7 NC_005259.1 + 46814 0.71 0.14334
Target:  5'- gCGCaCCACCGGCcaccugagugagcGCC-CCGGCgaGCUGCCc -3'
miRNA:   3'- -GCG-GGUGGCCG-------------UGGcGGUCG--UGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 46783 0.66 0.334881
Target:  5'- gCGCCCGCCGG-GCCGaacaCCgAGC-CUGCg -3'
miRNA:   3'- -GCGGGUGGCCgUGGC----GG-UCGuGGCGg -5'
23256 3' -64.7 NC_005259.1 + 46745 0.73 0.116967
Target:  5'- uGCCCGCgaUGGCugCGCCGaCACCugcGCCg -3'
miRNA:   3'- gCGGGUG--GCCGugGCGGUcGUGG---CGG- -5'
23256 3' -64.7 NC_005259.1 + 46564 0.69 0.21441
Target:  5'- gCGCCUAUggucgCGGCGUCGaCC-GCGCCGCCc -3'
miRNA:   3'- -GCGGGUG-----GCCGUGGC-GGuCGUGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 46339 0.69 0.2197
Target:  5'- uCGCgCACCGcuuguagguucuGgGCCGCgauGGCACCGCCc -3'
miRNA:   3'- -GCGgGUGGC------------CgUGGCGg--UCGUGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 46055 0.67 0.272442
Target:  5'- aGCCgA-UGGCcuugaGCUGCUcaAGCACCGCCg -3'
miRNA:   3'- gCGGgUgGCCG-----UGGCGG--UCGUGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 45905 0.68 0.23624
Target:  5'- gGUCgGCgGGCACCGCUGGUAgaccgaggcuCUGCCc -3'
miRNA:   3'- gCGGgUGgCCGUGGCGGUCGU----------GGCGG- -5'
23256 3' -64.7 NC_005259.1 + 45843 0.69 0.225101
Target:  5'- cCGCaCCACCGGgGCCGgUGGgACCgggcauGCCg -3'
miRNA:   3'- -GCG-GGUGGCCgUGGCgGUCgUGG------CGG- -5'
23256 3' -64.7 NC_005259.1 + 45770 0.76 0.067287
Target:  5'- aCGCCCucGCCGGg--UGCCAGCACCGCg -3'
miRNA:   3'- -GCGGG--UGGCCgugGCGGUCGUGGCGg -5'
23256 3' -64.7 NC_005259.1 + 45732 0.72 0.129701
Target:  5'- gCGCaCCACCGagGCCGC--GCACCGCCu -3'
miRNA:   3'- -GCG-GGUGGCcgUGGCGguCGUGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 45664 0.66 0.342431
Target:  5'- --aCCGCCGu--CCGCgUAGUACCGCCu -3'
miRNA:   3'- gcgGGUGGCcguGGCG-GUCGUGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 45624 0.83 0.019906
Target:  5'- uGCCCGCCGGgccgggcaGCgCGCCGGUGCCGCCg -3'
miRNA:   3'- gCGGGUGGCCg-------UG-GCGGUCGUGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 45505 0.67 0.29897
Target:  5'- gGUCgCugUGGcCACCgcGCCGGUguugGCCGCCg -3'
miRNA:   3'- gCGG-GugGCC-GUGG--CGGUCG----UGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 45380 0.68 0.253811
Target:  5'- uGCCCGaggaauuucUCGGgguCGCCGCCgAGCgcgcugaugGCCGCCg -3'
miRNA:   3'- gCGGGU---------GGCC---GUGGCGG-UCG---------UGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 45321 0.73 0.10791
Target:  5'- gGCcgCCGCCGaacugcguggccuGCGCCGCCuGgGCCGCCg -3'
miRNA:   3'- gCG--GGUGGC-------------CGUGGCGGuCgUGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 45248 0.66 0.342431
Target:  5'- aGgUCGCCGGuCAUCGCgAaCGCCGUCa -3'
miRNA:   3'- gCgGGUGGCC-GUGGCGgUcGUGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 45008 0.67 0.305906
Target:  5'- nCGaCCGCCGGgGCCGC----GCCGCCc -3'
miRNA:   3'- -GCgGGUGGCCgUGGCGgucgUGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 44976 0.76 0.069104
Target:  5'- uGCCgaggGCCGGUgcgACUGCCgaGGCACCGCCg -3'
miRNA:   3'- gCGGg---UGGCCG---UGGCGG--UCGUGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 44637 0.7 0.167312
Target:  5'- gCGCCUugACCGGUGCCGCC-GC-CCGaCUc -3'
miRNA:   3'- -GCGGG--UGGCCGUGGCGGuCGuGGC-GG- -5'
23256 3' -64.7 NC_005259.1 + 44602 0.69 0.21441
Target:  5'- uGCCCGCa-GCGCCcUUAGCguuGCCGCCg -3'
miRNA:   3'- gCGGGUGgcCGUGGcGGUCG---UGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.