Results 61 - 80 of 230 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23256 | 3' | -64.7 | NC_005259.1 | + | 35507 | 0.77 | 0.058871 |
Target: 5'- gGCCCcguuGCCGcCGCCGCCGGgcaCACCGCCc -3' miRNA: 3'- gCGGG----UGGCcGUGGCGGUC---GUGGCGG- -5' |
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23256 | 3' | -64.7 | NC_005259.1 | + | 34222 | 0.76 | 0.062108 |
Target: 5'- uGUCC-CCGGCGCUGCCGGUcuuGCCGUUg -3' miRNA: 3'- gCGGGuGGCCGUGGCGGUCG---UGGCGG- -5' |
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23256 | 3' | -64.7 | NC_005259.1 | + | 26046 | 0.75 | 0.076856 |
Target: 5'- aGCgCCGCCGGguUgGCCAuGcCGCCGCCg -3' miRNA: 3'- gCG-GGUGGCCguGgCGGU-C-GUGGCGG- -5' |
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23256 | 3' | -64.7 | NC_005259.1 | + | 51359 | 0.75 | 0.076856 |
Target: 5'- uGCCCGgUGGCACCGgCA-CACCGCg -3' miRNA: 3'- gCGGGUgGCCGUGGCgGUcGUGGCGg -5' |
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23256 | 3' | -64.7 | NC_005259.1 | + | 26806 | 0.75 | 0.076856 |
Target: 5'- nCGCCCgguugGCCGGUACCGgCGGUGgUGCCg -3' miRNA: 3'- -GCGGG-----UGGCCGUGGCgGUCGUgGCGG- -5' |
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23256 | 3' | -64.7 | NC_005259.1 | + | 44235 | 0.74 | 0.085437 |
Target: 5'- uCGCCCGCC-GCGCCGCCcGCG-CGCg -3' miRNA: 3'- -GCGGGUGGcCGUGGCGGuCGUgGCGg -5' |
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23256 | 3' | -64.7 | NC_005259.1 | + | 39405 | 0.74 | 0.087721 |
Target: 5'- gGUCCACCccgaGGCGgUGCCGGaCACCGUCa -3' miRNA: 3'- gCGGGUGG----CCGUgGCGGUC-GUGGCGG- -5' |
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23256 | 3' | -64.7 | NC_005259.1 | + | 36634 | 0.74 | 0.087721 |
Target: 5'- cCGCCCGCaaGGC-CCGCgauCAGCgaGCCGCCg -3' miRNA: 3'- -GCGGGUGg-CCGuGGCG---GUCG--UGGCGG- -5' |
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23256 | 3' | -64.7 | NC_005259.1 | + | 18546 | 0.74 | 0.090063 |
Target: 5'- aGCCCGCCGacgaacCAUCGCCGuaCGCCGCCg -3' miRNA: 3'- gCGGGUGGCc-----GUGGCGGUc-GUGGCGG- -5' |
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23256 | 3' | -64.7 | NC_005259.1 | + | 21988 | 0.74 | 0.098476 |
Target: 5'- -cCCCACCGGCACCGgcaagucgacggucaUCGgucGCACUGCCg -3' miRNA: 3'- gcGGGUGGCCGUGGC---------------GGU---CGUGGCGG- -5' |
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23256 | 3' | -64.7 | NC_005259.1 | + | 13411 | 0.75 | 0.076856 |
Target: 5'- gGCCUuccugGCCGGgguCGCCGCCGGgGCCGCg -3' miRNA: 3'- gCGGG-----UGGCC---GUGGCGGUCgUGGCGg -5' |
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23256 | 3' | -64.7 | NC_005259.1 | + | 28635 | 0.75 | 0.076856 |
Target: 5'- aGgCCACCGGUgccgacACCGCCGagGCCGCCg -3' miRNA: 3'- gCgGGUGGCCG------UGGCGGUcgUGGCGG- -5' |
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23256 | 3' | -64.7 | NC_005259.1 | + | 3114 | 0.76 | 0.06379 |
Target: 5'- gGCCauuGCgCGGCACCGUgggcagcggaCGGCACCGCCc -3' miRNA: 3'- gCGGg--UG-GCCGUGGCG----------GUCGUGGCGG- -5' |
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23256 | 3' | -64.7 | NC_005259.1 | + | 45770 | 0.76 | 0.067287 |
Target: 5'- aCGCCCucGCCGGg--UGCCAGCACCGCg -3' miRNA: 3'- -GCGGG--UGGCCgugGCGGUCGUGGCGg -5' |
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23256 | 3' | -64.7 | NC_005259.1 | + | 46939 | 0.76 | 0.067287 |
Target: 5'- uGCCCGCC-GCGCCGCCgaccgcguugAGCuuguuggccacGCCGCCg -3' miRNA: 3'- gCGGGUGGcCGUGGCGG----------UCG-----------UGGCGG- -5' |
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23256 | 3' | -64.7 | NC_005259.1 | + | 52135 | 0.76 | 0.067287 |
Target: 5'- cCGCCguCCGGCACCucGCCgaggcaGGCAgCGCCg -3' miRNA: 3'- -GCGGguGGCCGUGG--CGG------UCGUgGCGG- -5' |
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23256 | 3' | -64.7 | NC_005259.1 | + | 1357 | 0.76 | 0.069104 |
Target: 5'- uGCCUACUGGgcCGCuCGCC-GCGCCGCCc -3' miRNA: 3'- gCGGGUGGCC--GUG-GCGGuCGUGGCGG- -5' |
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23256 | 3' | -64.7 | NC_005259.1 | + | 16567 | 0.76 | 0.069104 |
Target: 5'- cCGCCCACCgGGCAgaUCGCCgaGGaCAUCGCCc -3' miRNA: 3'- -GCGGGUGG-CCGU--GGCGG--UC-GUGGCGG- -5' |
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23256 | 3' | -64.7 | NC_005259.1 | + | 44976 | 0.76 | 0.069104 |
Target: 5'- uGCCgaggGCCGGUgcgACUGCCgaGGCACCGCCg -3' miRNA: 3'- gCGGg---UGGCCG---UGGCGG--UCGUGGCGG- -5' |
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23256 | 3' | -64.7 | NC_005259.1 | + | 53244 | 0.76 | 0.069844 |
Target: 5'- uCGCgCCGCCGaCACCgucgccgccgcugucGCCGGUGCCGCCa -3' miRNA: 3'- -GCG-GGUGGCcGUGG---------------CGGUCGUGGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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