Results 1 - 20 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23257 | 3' | -59.2 | NC_005259.1 | + | 68623 | 0.68 | 0.368017 |
Target: 5'- gUUGGCCAgCCG-GGCAcCCUCGGCg- -3' miRNA: 3'- uGACUGGU-GGCuCCGUcGGAGUCGaa -5' |
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23257 | 3' | -59.2 | NC_005259.1 | + | 60266 | 0.67 | 0.420583 |
Target: 5'- gGCUGGCCACCagcgcugccGGGCGGCCaucgucgUCGGUg- -3' miRNA: 3'- -UGACUGGUGGc--------UCCGUCGG-------AGUCGaa -5' |
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23257 | 3' | -59.2 | NC_005259.1 | + | 60150 | 0.66 | 0.489465 |
Target: 5'- cUUGGCCGCCGccucaGCGGCCUCacgGGCg- -3' miRNA: 3'- uGACUGGUGGCuc---CGUCGGAG---UCGaa -5' |
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23257 | 3' | -59.2 | NC_005259.1 | + | 58781 | 0.72 | 0.202871 |
Target: 5'- cGCUGugCGCCggucGAGGCGgugauuGCCUCGGCg- -3' miRNA: 3'- -UGACugGUGG----CUCCGU------CGGAGUCGaa -5' |
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23257 | 3' | -59.2 | NC_005259.1 | + | 55319 | 0.66 | 0.489465 |
Target: 5'- --cGACCACaGGGGUGGUCUUGGCg- -3' miRNA: 3'- ugaCUGGUGgCUCCGUCGGAGUCGaa -5' |
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23257 | 3' | -59.2 | NC_005259.1 | + | 55033 | 0.71 | 0.249343 |
Target: 5'- cACgGGCUGCCGAGGUgcuuGCCUCGGUg- -3' miRNA: 3'- -UGaCUGGUGGCUCCGu---CGGAGUCGaa -5' |
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23257 | 3' | -59.2 | NC_005259.1 | + | 54729 | 0.67 | 0.459675 |
Target: 5'- --gGACauaGCCGAGGCuGCCgaCAGCg- -3' miRNA: 3'- ugaCUGg--UGGCUCCGuCGGa-GUCGaa -5' |
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23257 | 3' | -59.2 | NC_005259.1 | + | 54693 | 0.7 | 0.289712 |
Target: 5'- --aGACCGugUCGAGGCggguGGCCUCAGCc- -3' miRNA: 3'- ugaCUGGU--GGCUCCG----UCGGAGUCGaa -5' |
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23257 | 3' | -59.2 | NC_005259.1 | + | 51131 | 0.66 | 0.530516 |
Target: 5'- --aGAUCACCGucgGGGCGGCCaUgAGCg- -3' miRNA: 3'- ugaCUGGUGGC---UCCGUCGG-AgUCGaa -5' |
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23257 | 3' | -59.2 | NC_005259.1 | + | 49125 | 0.74 | 0.16811 |
Target: 5'- cGCUGAUCACCGGGGUcaagcuGGCCaagcagaUCGGCUa -3' miRNA: 3'- -UGACUGGUGGCUCCG------UCGG-------AGUCGAa -5' |
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23257 | 3' | -59.2 | NC_005259.1 | + | 48425 | 0.67 | 0.420583 |
Target: 5'- --cGACCGCCaccaccgaggcgcGAGGCAGCggCAGCg- -3' miRNA: 3'- ugaCUGGUGG-------------CUCCGUCGgaGUCGaa -5' |
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23257 | 3' | -59.2 | NC_005259.1 | + | 48040 | 0.67 | 0.459675 |
Target: 5'- gUUGACCACCccGGUGGCCaCGGCg- -3' miRNA: 3'- uGACUGGUGGcuCCGUCGGaGUCGaa -5' |
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23257 | 3' | -59.2 | NC_005259.1 | + | 45729 | 0.68 | 0.412274 |
Target: 5'- cCUGcgcACCACCGAGGCcgcgcaccGCCUCGGg-- -3' miRNA: 3'- uGAC---UGGUGGCUCCGu-------CGGAGUCgaa -5' |
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23257 | 3' | -59.2 | NC_005259.1 | + | 45006 | 0.68 | 0.412274 |
Target: 5'- cGCcGACCGCCGGGGCcgcGCCgccCuGCUUc -3' miRNA: 3'- -UGaCUGGUGGCUCCGu--CGGa--GuCGAA- -5' |
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23257 | 3' | -59.2 | NC_005259.1 | + | 42539 | 0.68 | 0.412274 |
Target: 5'- -aUGGgCACCGAGGUGGCgggCAGCUc -3' miRNA: 3'- ugACUgGUGGCUCCGUCGga-GUCGAa -5' |
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23257 | 3' | -59.2 | NC_005259.1 | + | 40884 | 0.68 | 0.394177 |
Target: 5'- cACcGGCCACCGuGGCGGggUCGGCa- -3' miRNA: 3'- -UGaCUGGUGGCuCCGUCggAGUCGaa -5' |
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23257 | 3' | -59.2 | NC_005259.1 | + | 36944 | 0.68 | 0.412274 |
Target: 5'- uGCUG-UCACCGGGGUGcccgcgagaccGCCUCGGCc- -3' miRNA: 3'- -UGACuGGUGGCUCCGU-----------CGGAGUCGaa -5' |
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23257 | 3' | -59.2 | NC_005259.1 | + | 35884 | 0.7 | 0.289712 |
Target: 5'- ---cGCCGCCGAGGCAGaCCaCGGCg- -3' miRNA: 3'- ugacUGGUGGCUCCGUC-GGaGUCGaa -5' |
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23257 | 3' | -59.2 | NC_005259.1 | + | 34532 | 1.05 | 0.000759 |
Target: 5'- gACUGACCACCGAGGCAGCCUCAGCUUg -3' miRNA: 3'- -UGACUGGUGGCUCCGUCGGAGUCGAA- -5' |
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23257 | 3' | -59.2 | NC_005259.1 | + | 33591 | 0.7 | 0.296919 |
Target: 5'- cGCgGGCCACCGAGGCgcGGUCg-AGCUg -3' miRNA: 3'- -UGaCUGGUGGCUCCG--UCGGagUCGAa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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