Results 1 - 20 of 57 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23260 | 5' | -59.9 | NC_005259.1 | + | 48605 | 0.66 | 0.570046 |
Target: 5'- ---aGCGCGGGcGCUACcgCCGUGCGcACu -3' miRNA: 3'- cgugUGCGCCCuUGGUG--GGCGCGC-UG- -5' |
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23260 | 5' | -59.9 | NC_005259.1 | + | 36604 | 0.66 | 0.570046 |
Target: 5'- cGUACguaaACGCGacccuuGCCGCCCGCGCcGCc -3' miRNA: 3'- -CGUG----UGCGCccu---UGGUGGGCGCGcUG- -5' |
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23260 | 5' | -59.9 | NC_005259.1 | + | 55450 | 0.66 | 0.570046 |
Target: 5'- -aACGCGUacaGGGCCACCCGUGCa-- -3' miRNA: 3'- cgUGUGCGcc-CUUGGUGGGCGCGcug -5' |
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23260 | 5' | -59.9 | NC_005259.1 | + | 53994 | 0.66 | 0.569016 |
Target: 5'- uGCACagcuccaACGcCGGGGuCCACCa--GCGACg -3' miRNA: 3'- -CGUG-------UGC-GCCCUuGGUGGgcgCGCUG- -5' |
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23260 | 5' | -59.9 | NC_005259.1 | + | 16400 | 0.66 | 0.559761 |
Target: 5'- cCAUACGgGGGAcgcaGCCcaccgagguGCCCGUcgaGCGGCc -3' miRNA: 3'- cGUGUGCgCCCU----UGG---------UGGGCG---CGCUG- -5' |
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23260 | 5' | -59.9 | NC_005259.1 | + | 60243 | 0.66 | 0.559761 |
Target: 5'- gGCACGCuugcguGCGGGugcaaggcuGGCCACCaGCGCuGCc -3' miRNA: 3'- -CGUGUG------CGCCC---------UUGGUGGgCGCGcUG- -5' |
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23260 | 5' | -59.9 | NC_005259.1 | + | 66012 | 0.66 | 0.559761 |
Target: 5'- uGCGCACccuCGGG-GCCGCacguguugCGCGCGAg -3' miRNA: 3'- -CGUGUGc--GCCCuUGGUGg-------GCGCGCUg -5' |
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23260 | 5' | -59.9 | NC_005259.1 | + | 19514 | 0.66 | 0.558735 |
Target: 5'- cCACGCGCGcGGAaauccucACCGCC-GUGCaGGCc -3' miRNA: 3'- cGUGUGCGC-CCU-------UGGUGGgCGCG-CUG- -5' |
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23260 | 5' | -59.9 | NC_005259.1 | + | 23950 | 0.66 | 0.549527 |
Target: 5'- uGCGCACcccgagaCGGGccgauuGACCucguACCCGCGCGcCa -3' miRNA: 3'- -CGUGUGc------GCCC------UUGG----UGGGCGCGCuG- -5' |
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23260 | 5' | -59.9 | NC_005259.1 | + | 16092 | 0.66 | 0.539353 |
Target: 5'- aCACcauCGUGGaGAugUACCgGCGCGGa -3' miRNA: 3'- cGUGu--GCGCC-CUugGUGGgCGCGCUg -5' |
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23260 | 5' | -59.9 | NC_005259.1 | + | 56092 | 0.66 | 0.539353 |
Target: 5'- gGUGCuCGUcGGGGCCA-CCGCGUGGCc -3' miRNA: 3'- -CGUGuGCGcCCUUGGUgGGCGCGCUG- -5' |
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23260 | 5' | -59.9 | NC_005259.1 | + | 45767 | 0.66 | 0.539353 |
Target: 5'- aGCACGCccucgcCGGGuGCCAgcaCCGCGuUGACg -3' miRNA: 3'- -CGUGUGc-----GCCCuUGGUg--GGCGC-GCUG- -5' |
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23260 | 5' | -59.9 | NC_005259.1 | + | 26476 | 0.66 | 0.537325 |
Target: 5'- aGCACACGUaguugucGcGGAacgccgcgagcucGCCGCCCG-GCGAg -3' miRNA: 3'- -CGUGUGCG-------C-CCU-------------UGGUGGGCgCGCUg -5' |
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23260 | 5' | -59.9 | NC_005259.1 | + | 39005 | 0.66 | 0.533279 |
Target: 5'- cGUugAgCGCGGuGACCAgacccgagauccguuCCUGCGCGAUc -3' miRNA: 3'- -CGugU-GCGCCcUUGGU---------------GGGCGCGCUG- -5' |
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23260 | 5' | -59.9 | NC_005259.1 | + | 66105 | 0.66 | 0.529243 |
Target: 5'- aGCGCACGCGcGAcuuCUACgCGCGuCGAg -3' miRNA: 3'- -CGUGUGCGCcCUu--GGUGgGCGC-GCUg -5' |
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23260 | 5' | -59.9 | NC_005259.1 | + | 19869 | 0.66 | 0.529243 |
Target: 5'- cGCGCcCGcCGGGAucGCCgacgccgcGCCCaagauGUGCGACa -3' miRNA: 3'- -CGUGuGC-GCCCU--UGG--------UGGG-----CGCGCUG- -5' |
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23260 | 5' | -59.9 | NC_005259.1 | + | 48055 | 0.66 | 0.519203 |
Target: 5'- gGC-CACgGCGGGuagcGCCGCCgCGCccugaGCGAUg -3' miRNA: 3'- -CGuGUG-CGCCCu---UGGUGG-GCG-----CGCUG- -5' |
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23260 | 5' | -59.9 | NC_005259.1 | + | 13337 | 0.66 | 0.519203 |
Target: 5'- cCACG-GCGGG-ACCGCCC-CGCcGCa -3' miRNA: 3'- cGUGUgCGCCCuUGGUGGGcGCGcUG- -5' |
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23260 | 5' | -59.9 | NC_005259.1 | + | 43679 | 0.66 | 0.519203 |
Target: 5'- uCACACcgccgccgGUGGcGAACCucuugaaaCCGCGCGACc -3' miRNA: 3'- cGUGUG--------CGCC-CUUGGug------GGCGCGCUG- -5' |
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23260 | 5' | -59.9 | NC_005259.1 | + | 63702 | 0.66 | 0.519203 |
Target: 5'- uGCGCcugcccaGCGGGGAUCgggGCCUGCGCaGCc -3' miRNA: 3'- -CGUGug-----CGCCCUUGG---UGGGCGCGcUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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