miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23260 5' -59.9 NC_005259.1 + 55450 0.66 0.570046
Target:  5'- -aACGCGUacaGGGCCACCCGUGCa-- -3'
miRNA:   3'- cgUGUGCGcc-CUUGGUGGGCGCGcug -5'
23260 5' -59.9 NC_005259.1 + 36604 0.66 0.570046
Target:  5'- cGUACguaaACGCGacccuuGCCGCCCGCGCcGCc -3'
miRNA:   3'- -CGUG----UGCGCccu---UGGUGGGCGCGcUG- -5'
23260 5' -59.9 NC_005259.1 + 48605 0.66 0.570046
Target:  5'- ---aGCGCGGGcGCUACcgCCGUGCGcACu -3'
miRNA:   3'- cgugUGCGCCCuUGGUG--GGCGCGC-UG- -5'
23260 5' -59.9 NC_005259.1 + 53994 0.66 0.569016
Target:  5'- uGCACagcuccaACGcCGGGGuCCACCa--GCGACg -3'
miRNA:   3'- -CGUG-------UGC-GCCCUuGGUGGgcgCGCUG- -5'
23260 5' -59.9 NC_005259.1 + 60243 0.66 0.559761
Target:  5'- gGCACGCuugcguGCGGGugcaaggcuGGCCACCaGCGCuGCc -3'
miRNA:   3'- -CGUGUG------CGCCC---------UUGGUGGgCGCGcUG- -5'
23260 5' -59.9 NC_005259.1 + 16400 0.66 0.559761
Target:  5'- cCAUACGgGGGAcgcaGCCcaccgagguGCCCGUcgaGCGGCc -3'
miRNA:   3'- cGUGUGCgCCCU----UGG---------UGGGCG---CGCUG- -5'
23260 5' -59.9 NC_005259.1 + 66012 0.66 0.559761
Target:  5'- uGCGCACccuCGGG-GCCGCacguguugCGCGCGAg -3'
miRNA:   3'- -CGUGUGc--GCCCuUGGUGg-------GCGCGCUg -5'
23260 5' -59.9 NC_005259.1 + 19514 0.66 0.558735
Target:  5'- cCACGCGCGcGGAaauccucACCGCC-GUGCaGGCc -3'
miRNA:   3'- cGUGUGCGC-CCU-------UGGUGGgCGCG-CUG- -5'
23260 5' -59.9 NC_005259.1 + 23950 0.66 0.549527
Target:  5'- uGCGCACcccgagaCGGGccgauuGACCucguACCCGCGCGcCa -3'
miRNA:   3'- -CGUGUGc------GCCC------UUGG----UGGGCGCGCuG- -5'
23260 5' -59.9 NC_005259.1 + 45767 0.66 0.539353
Target:  5'- aGCACGCccucgcCGGGuGCCAgcaCCGCGuUGACg -3'
miRNA:   3'- -CGUGUGc-----GCCCuUGGUg--GGCGC-GCUG- -5'
23260 5' -59.9 NC_005259.1 + 56092 0.66 0.539353
Target:  5'- gGUGCuCGUcGGGGCCA-CCGCGUGGCc -3'
miRNA:   3'- -CGUGuGCGcCCUUGGUgGGCGCGCUG- -5'
23260 5' -59.9 NC_005259.1 + 16092 0.66 0.539353
Target:  5'- aCACcauCGUGGaGAugUACCgGCGCGGa -3'
miRNA:   3'- cGUGu--GCGCC-CUugGUGGgCGCGCUg -5'
23260 5' -59.9 NC_005259.1 + 26476 0.66 0.537325
Target:  5'- aGCACACGUaguugucGcGGAacgccgcgagcucGCCGCCCG-GCGAg -3'
miRNA:   3'- -CGUGUGCG-------C-CCU-------------UGGUGGGCgCGCUg -5'
23260 5' -59.9 NC_005259.1 + 39005 0.66 0.533279
Target:  5'- cGUugAgCGCGGuGACCAgacccgagauccguuCCUGCGCGAUc -3'
miRNA:   3'- -CGugU-GCGCCcUUGGU---------------GGGCGCGCUG- -5'
23260 5' -59.9 NC_005259.1 + 66105 0.66 0.529243
Target:  5'- aGCGCACGCGcGAcuuCUACgCGCGuCGAg -3'
miRNA:   3'- -CGUGUGCGCcCUu--GGUGgGCGC-GCUg -5'
23260 5' -59.9 NC_005259.1 + 19869 0.66 0.529243
Target:  5'- cGCGCcCGcCGGGAucGCCgacgccgcGCCCaagauGUGCGACa -3'
miRNA:   3'- -CGUGuGC-GCCCU--UGG--------UGGG-----CGCGCUG- -5'
23260 5' -59.9 NC_005259.1 + 48055 0.66 0.519203
Target:  5'- gGC-CACgGCGGGuagcGCCGCCgCGCccugaGCGAUg -3'
miRNA:   3'- -CGuGUG-CGCCCu---UGGUGG-GCG-----CGCUG- -5'
23260 5' -59.9 NC_005259.1 + 13337 0.66 0.519203
Target:  5'- cCACG-GCGGG-ACCGCCC-CGCcGCa -3'
miRNA:   3'- cGUGUgCGCCCuUGGUGGGcGCGcUG- -5'
23260 5' -59.9 NC_005259.1 + 43679 0.66 0.519203
Target:  5'- uCACACcgccgccgGUGGcGAACCucuugaaaCCGCGCGACc -3'
miRNA:   3'- cGUGUG--------CGCC-CUUGGug------GGCGCGCUG- -5'
23260 5' -59.9 NC_005259.1 + 63702 0.66 0.519203
Target:  5'- uGCGCcugcccaGCGGGGAUCgggGCCUGCGCaGCc -3'
miRNA:   3'- -CGUGug-----CGCCCUUGG---UGGGCGCGcUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.