Results 1 - 20 of 77 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23261 | 3' | -58.1 | NC_005259.1 | + | 60482 | 0.66 | 0.618928 |
Target: 5'- --aGGCACGcaccAGCGCCCaGCACGCGccgguguuGUCg -3' miRNA: 3'- ugcUCGUGC----UUGUGGG-CGUGCGC--------CAG- -5' |
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23261 | 3' | -58.1 | NC_005259.1 | + | 32855 | 0.66 | 0.640176 |
Target: 5'- cUGAG-ACGAACuugACCucgaCGCGCGCGGUg -3' miRNA: 3'- uGCUCgUGCUUG---UGG----GCGUGCGCCAg -5' |
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23261 | 3' | -58.1 | NC_005259.1 | + | 56360 | 0.66 | 0.629551 |
Target: 5'- uCGGGCACGcgguACAgCCGU-CGCGGg- -3' miRNA: 3'- uGCUCGUGCu---UGUgGGCGuGCGCCag -5' |
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23261 | 3' | -58.1 | NC_005259.1 | + | 64268 | 0.66 | 0.629551 |
Target: 5'- cGCGAGCACGAG--UUCGCGCGCc--- -3' miRNA: 3'- -UGCUCGUGCUUguGGGCGUGCGccag -5' |
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23261 | 3' | -58.1 | NC_005259.1 | + | 65161 | 0.66 | 0.650795 |
Target: 5'- aACGGGC-C-AugGCCCGCcgggucaagGCGCuGGUCg -3' miRNA: 3'- -UGCUCGuGcUugUGGGCG---------UGCG-CCAG- -5' |
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23261 | 3' | -58.1 | NC_005259.1 | + | 58767 | 0.66 | 0.597723 |
Target: 5'- aACGAcGCuGCGGGCGCUgUGCGC-CGGUCg -3' miRNA: 3'- -UGCU-CG-UGCUUGUGG-GCGUGcGCCAG- -5' |
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23261 | 3' | -58.1 | NC_005259.1 | + | 57305 | 0.66 | 0.639114 |
Target: 5'- cACGA-CAuCGAGCACCgGCGgugucggUGUGGUCa -3' miRNA: 3'- -UGCUcGU-GCUUGUGGgCGU-------GCGCCAG- -5' |
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23261 | 3' | -58.1 | NC_005259.1 | + | 26501 | 0.66 | 0.629551 |
Target: 5'- cGCGAGCuCGc-CGCCCGgcgagaagaGCGCGGUg -3' miRNA: 3'- -UGCUCGuGCuuGUGGGCg--------UGCGCCAg -5' |
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23261 | 3' | -58.1 | NC_005259.1 | + | 14505 | 0.66 | 0.597723 |
Target: 5'- uGCccGCAUGcACACCggcgaGCACGCGGUg -3' miRNA: 3'- -UGcuCGUGCuUGUGGg----CGUGCGCCAg -5' |
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23261 | 3' | -58.1 | NC_005259.1 | + | 13247 | 0.66 | 0.608316 |
Target: 5'- -aGGGC-CGAGCACCCG---GCGGUa -3' miRNA: 3'- ugCUCGuGCUUGUGGGCgugCGCCAg -5' |
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23261 | 3' | -58.1 | NC_005259.1 | + | 57539 | 0.66 | 0.639114 |
Target: 5'- gGCGAugGCGuccucggUGAACAUCCGCGuaaaGCGGUUg -3' miRNA: 3'- -UGCU--CGU-------GCUUGUGGGCGUg---CGCCAG- -5' |
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23261 | 3' | -58.1 | NC_005259.1 | + | 61254 | 0.66 | 0.629551 |
Target: 5'- uCGGGUGCGAGCAUgcgaCCGU-CGCuGGUCu -3' miRNA: 3'- uGCUCGUGCUUGUG----GGCGuGCG-CCAG- -5' |
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23261 | 3' | -58.1 | NC_005259.1 | + | 9896 | 0.67 | 0.566139 |
Target: 5'- cGCGcGCgACGAGCuuucgGCCCuCGCGCuGGUCa -3' miRNA: 3'- -UGCuCG-UGCUUG-----UGGGcGUGCG-CCAG- -5' |
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23261 | 3' | -58.1 | NC_005259.1 | + | 9958 | 0.67 | 0.55466 |
Target: 5'- uCGAGC-CGAcCGCCCgaccaccGCAC-CGGUCg -3' miRNA: 3'- uGCUCGuGCUuGUGGG-------CGUGcGCCAG- -5' |
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23261 | 3' | -58.1 | NC_005259.1 | + | 60173 | 0.67 | 0.576627 |
Target: 5'- cACGGGCgGCGAACGCCUGCuCGaccgacCGGg- -3' miRNA: 3'- -UGCUCG-UGCUUGUGGGCGuGC------GCCag -5' |
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23261 | 3' | -58.1 | NC_005259.1 | + | 33527 | 0.67 | 0.54532 |
Target: 5'- cCGAGguCGAcccACGCCUGCugaucguCGcCGGUCa -3' miRNA: 3'- uGCUCguGCU---UGUGGGCGu------GC-GCCAG- -5' |
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23261 | 3' | -58.1 | NC_005259.1 | + | 31906 | 0.67 | 0.555701 |
Target: 5'- cCG-GCGCGAGCGCCucaaucucgucaCGCAcuCGgGGUCg -3' miRNA: 3'- uGCuCGUGCUUGUGG------------GCGU--GCgCCAG- -5' |
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23261 | 3' | -58.1 | NC_005259.1 | + | 11320 | 0.67 | 0.555701 |
Target: 5'- gACGGGCGCGca-GCUCGU-CGuCGGUCa -3' miRNA: 3'- -UGCUCGUGCuugUGGGCGuGC-GCCAG- -5' |
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23261 | 3' | -58.1 | NC_005259.1 | + | 63752 | 0.67 | 0.535002 |
Target: 5'- gGCGGGCACGAacaGCACaCCGUuguucaucACGCGuGa- -3' miRNA: 3'- -UGCUCGUGCU---UGUG-GGCG--------UGCGC-Cag -5' |
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23261 | 3' | -58.1 | NC_005259.1 | + | 32901 | 0.67 | 0.566139 |
Target: 5'- gGCGAGggUGAGCcacccgGCCCGCucggGCGCGG-Cg -3' miRNA: 3'- -UGCUCguGCUUG------UGGGCG----UGCGCCaG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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