miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23261 3' -58.1 NC_005259.1 + 33754 1.09 0.000685
Target:  5'- cACGAGCACGAACACCCGCACGCGGUCa -3'
miRNA:   3'- -UGCUCGUGCUUGUGGGCGUGCGCCAG- -5'
23261 3' -58.1 NC_005259.1 + 61414 0.81 0.079492
Target:  5'- cGCGGGCACGGacaACACCCuugcggGCGCGcCGGUCg -3'
miRNA:   3'- -UGCUCGUGCU---UGUGGG------CGUGC-GCCAG- -5'
23261 3' -58.1 NC_005259.1 + 66713 0.79 0.113589
Target:  5'- uCGuGCACGAugAUGCCCGCcgccACGCGGUCa -3'
miRNA:   3'- uGCuCGUGCU--UGUGGGCG----UGCGCCAG- -5'
23261 3' -58.1 NC_005259.1 + 20524 0.78 0.119922
Target:  5'- cCGAGCACGggUgcgcuGCCCGCAgCGUGGUg -3'
miRNA:   3'- uGCUCGUGCuuG-----UGGGCGU-GCGCCAg -5'
23261 3' -58.1 NC_005259.1 + 29969 0.77 0.140941
Target:  5'- gGCGGGCggugaccguccaACGGAC-CCCGCACgGUGGUCa -3'
miRNA:   3'- -UGCUCG------------UGCUUGuGGGCGUG-CGCCAG- -5'
23261 3' -58.1 NC_005259.1 + 57760 0.76 0.169692
Target:  5'- uGCGAGcCGCGAGCGCCUGCugaaucUGCGcGUCg -3'
miRNA:   3'- -UGCUC-GUGCUUGUGGGCGu-----GCGC-CAG- -5'
23261 3' -58.1 NC_005259.1 + 52896 0.74 0.21265
Target:  5'- cGCGAGUACGGGCACCUGCucacgacCGCcgacucgauggccuGGUCg -3'
miRNA:   3'- -UGCUCGUGCUUGUGGGCGu------GCG--------------CCAG- -5'
23261 3' -58.1 NC_005259.1 + 10702 0.73 0.249336
Target:  5'- uUGAGCAUGGACggguaguugGCCCGCAUGauGUCg -3'
miRNA:   3'- uGCUCGUGCUUG---------UGGGCGUGCgcCAG- -5'
23261 3' -58.1 NC_005259.1 + 36299 0.72 0.288988
Target:  5'- uUGAGCGCGAGCGCUUggGCGgGCGGg- -3'
miRNA:   3'- uGCUCGUGCUUGUGGG--CGUgCGCCag -5'
23261 3' -58.1 NC_005259.1 + 44763 0.72 0.288988
Target:  5'- uUGAGCAcCGAu--CCCGCAUcgGCGGUCg -3'
miRNA:   3'- uGCUCGU-GCUuguGGGCGUG--CGCCAG- -5'
23261 3' -58.1 NC_005259.1 + 43240 0.72 0.296059
Target:  5'- aGCGAGCugACGAugcCGCCCGCGC-CGGg- -3'
miRNA:   3'- -UGCUCG--UGCUu--GUGGGCGUGcGCCag -5'
23261 3' -58.1 NC_005259.1 + 46599 0.72 0.310603
Target:  5'- gGCGAGCA---GCGCgUCGUugGCGGUCu -3'
miRNA:   3'- -UGCUCGUgcuUGUG-GGCGugCGCCAG- -5'
23261 3' -58.1 NC_005259.1 + 8288 0.72 0.313576
Target:  5'- -gGuGCGCGGGCACCCGCACGgaaacgccgccuuguCGGa- -3'
miRNA:   3'- ugCuCGUGCUUGUGGGCGUGC---------------GCCag -5'
23261 3' -58.1 NC_005259.1 + 27192 0.71 0.325684
Target:  5'- uGCGAcGCugGAACuCCCGCAcCGCGaGcUCg -3'
miRNA:   3'- -UGCU-CGugCUUGuGGGCGU-GCGC-C-AG- -5'
23261 3' -58.1 NC_005259.1 + 33881 0.71 0.325684
Target:  5'- gUGAGCACacgcggGAAcCACCCGCGCGaCGGg- -3'
miRNA:   3'- uGCUCGUG------CUU-GUGGGCGUGC-GCCag -5'
23261 3' -58.1 NC_005259.1 + 47763 0.71 0.325684
Target:  5'- aGCGGcuGCGCGAugGCCuuuuggaaauCGCGCaGCGGUCc -3'
miRNA:   3'- -UGCU--CGUGCUugUGG----------GCGUG-CGCCAG- -5'
23261 3' -58.1 NC_005259.1 + 30232 0.71 0.333426
Target:  5'- cACGAGCGCc-GCACCCGUGaGCGGaUCu -3'
miRNA:   3'- -UGCUCGUGcuUGUGGGCGUgCGCC-AG- -5'
23261 3' -58.1 NC_005259.1 + 51667 0.71 0.341303
Target:  5'- cGCGGGCGCGucggGCACgggCGCGCGaUGGUCu -3'
miRNA:   3'- -UGCUCGUGCu---UGUGg--GCGUGC-GCCAG- -5'
23261 3' -58.1 NC_005259.1 + 9499 0.71 0.341303
Target:  5'- gGCGAGgaACGuGCGCUCGuCGCGCGcGUCg -3'
miRNA:   3'- -UGCUCg-UGCuUGUGGGC-GUGCGC-CAG- -5'
23261 3' -58.1 NC_005259.1 + 7717 0.71 0.356635
Target:  5'- cUGGGC-CGAGggauaccuCACCCGCcucgaggACGCGGUCa -3'
miRNA:   3'- uGCUCGuGCUU--------GUGGGCG-------UGCGCCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.