Results 1 - 20 of 77 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23261 | 3' | -58.1 | NC_005259.1 | + | 65161 | 0.66 | 0.650795 |
Target: 5'- aACGGGC-C-AugGCCCGCcgggucaagGCGCuGGUCg -3' miRNA: 3'- -UGCUCGuGcUugUGGGCG---------UGCG-CCAG- -5' |
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23261 | 3' | -58.1 | NC_005259.1 | + | 8288 | 0.72 | 0.313576 |
Target: 5'- -gGuGCGCGGGCACCCGCACGgaaacgccgccuuguCGGa- -3' miRNA: 3'- ugCuCGUGCUUGUGGGCGUGC---------------GCCag -5' |
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23261 | 3' | -58.1 | NC_005259.1 | + | 27192 | 0.71 | 0.325684 |
Target: 5'- uGCGAcGCugGAACuCCCGCAcCGCGaGcUCg -3' miRNA: 3'- -UGCU-CGugCUUGuGGGCGU-GCGC-C-AG- -5' |
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23261 | 3' | -58.1 | NC_005259.1 | + | 33881 | 0.71 | 0.325684 |
Target: 5'- gUGAGCACacgcggGAAcCACCCGCGCGaCGGg- -3' miRNA: 3'- uGCUCGUG------CUU-GUGGGCGUGC-GCCag -5' |
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23261 | 3' | -58.1 | NC_005259.1 | + | 47763 | 0.71 | 0.325684 |
Target: 5'- aGCGGcuGCGCGAugGCCuuuuggaaauCGCGCaGCGGUCc -3' miRNA: 3'- -UGCU--CGUGCUugUGG----------GCGUG-CGCCAG- -5' |
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23261 | 3' | -58.1 | NC_005259.1 | + | 30232 | 0.71 | 0.333426 |
Target: 5'- cACGAGCGCc-GCACCCGUGaGCGGaUCu -3' miRNA: 3'- -UGCUCGUGcuUGUGGGCGUgCGCC-AG- -5' |
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23261 | 3' | -58.1 | NC_005259.1 | + | 51667 | 0.71 | 0.341303 |
Target: 5'- cGCGGGCGCGucggGCACgggCGCGCGaUGGUCu -3' miRNA: 3'- -UGCUCGUGCu---UGUGg--GCGUGC-GCCAG- -5' |
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23261 | 3' | -58.1 | NC_005259.1 | + | 9499 | 0.71 | 0.341303 |
Target: 5'- gGCGAGgaACGuGCGCUCGuCGCGCGcGUCg -3' miRNA: 3'- -UGCUCg-UGCuUGUGGGC-GUGCGC-CAG- -5' |
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23261 | 3' | -58.1 | NC_005259.1 | + | 7717 | 0.71 | 0.356635 |
Target: 5'- cUGGGC-CGAGggauaccuCACCCGCcucgaggACGCGGUCa -3' miRNA: 3'- uGCUCGuGCUU--------GUGGGCG-------UGCGCCAG- -5' |
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23261 | 3' | -58.1 | NC_005259.1 | + | 46599 | 0.72 | 0.310603 |
Target: 5'- gGCGAGCA---GCGCgUCGUugGCGGUCu -3' miRNA: 3'- -UGCUCGUgcuUGUG-GGCGugCGCCAG- -5' |
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23261 | 3' | -58.1 | NC_005259.1 | + | 43240 | 0.72 | 0.296059 |
Target: 5'- aGCGAGCugACGAugcCGCCCGCGC-CGGg- -3' miRNA: 3'- -UGCUCG--UGCUu--GUGGGCGUGcGCCag -5' |
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23261 | 3' | -58.1 | NC_005259.1 | + | 44763 | 0.72 | 0.288988 |
Target: 5'- uUGAGCAcCGAu--CCCGCAUcgGCGGUCg -3' miRNA: 3'- uGCUCGU-GCUuguGGGCGUG--CGCCAG- -5' |
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23261 | 3' | -58.1 | NC_005259.1 | + | 61414 | 0.81 | 0.079492 |
Target: 5'- cGCGGGCACGGacaACACCCuugcggGCGCGcCGGUCg -3' miRNA: 3'- -UGCUCGUGCU---UGUGGG------CGUGC-GCCAG- -5' |
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23261 | 3' | -58.1 | NC_005259.1 | + | 66713 | 0.79 | 0.113589 |
Target: 5'- uCGuGCACGAugAUGCCCGCcgccACGCGGUCa -3' miRNA: 3'- uGCuCGUGCU--UGUGGGCG----UGCGCCAG- -5' |
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23261 | 3' | -58.1 | NC_005259.1 | + | 20524 | 0.78 | 0.119922 |
Target: 5'- cCGAGCACGggUgcgcuGCCCGCAgCGUGGUg -3' miRNA: 3'- uGCUCGUGCuuG-----UGGGCGU-GCGCCAg -5' |
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23261 | 3' | -58.1 | NC_005259.1 | + | 29969 | 0.77 | 0.140941 |
Target: 5'- gGCGGGCggugaccguccaACGGAC-CCCGCACgGUGGUCa -3' miRNA: 3'- -UGCUCG------------UGCUUGuGGGCGUG-CGCCAG- -5' |
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23261 | 3' | -58.1 | NC_005259.1 | + | 57760 | 0.76 | 0.169692 |
Target: 5'- uGCGAGcCGCGAGCGCCUGCugaaucUGCGcGUCg -3' miRNA: 3'- -UGCUC-GUGCUUGUGGGCGu-----GCGC-CAG- -5' |
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23261 | 3' | -58.1 | NC_005259.1 | + | 52896 | 0.74 | 0.21265 |
Target: 5'- cGCGAGUACGGGCACCUGCucacgacCGCcgacucgauggccuGGUCg -3' miRNA: 3'- -UGCUCGUGCUUGUGGGCGu------GCG--------------CCAG- -5' |
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23261 | 3' | -58.1 | NC_005259.1 | + | 10702 | 0.73 | 0.249336 |
Target: 5'- uUGAGCAUGGACggguaguugGCCCGCAUGauGUCg -3' miRNA: 3'- uGCUCGUGCUUG---------UGGGCGUGCgcCAG- -5' |
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23261 | 3' | -58.1 | NC_005259.1 | + | 36299 | 0.72 | 0.288988 |
Target: 5'- uUGAGCGCGAGCGCUUggGCGgGCGGg- -3' miRNA: 3'- uGCUCGUGCUUGUGGG--CGUgCGCCag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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