miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23261 3' -58.1 NC_005259.1 + 1280 0.67 0.587157
Target:  5'- aACGuccuGCACG-AC-CCCGaggucgagcucUACGCGGUCg -3'
miRNA:   3'- -UGCu---CGUGCuUGuGGGC-----------GUGCGCCAG- -5'
23261 3' -58.1 NC_005259.1 + 4290 0.68 0.51458
Target:  5'- cACGAGCACGGACcggcgGCCCuGCgaugaGCGCGa-- -3'
miRNA:   3'- -UGCUCGUGCUUG-----UGGG-CG-----UGCGCcag -5'
23261 3' -58.1 NC_005259.1 + 7184 0.7 0.391337
Target:  5'- gGCGAGUgcccggccuGCGGACGCaCCGgGCuGCGGUg -3'
miRNA:   3'- -UGCUCG---------UGCUUGUG-GGCgUG-CGCCAg -5'
23261 3' -58.1 NC_005259.1 + 7717 0.71 0.356635
Target:  5'- cUGGGC-CGAGggauaccuCACCCGCcucgaggACGCGGUCa -3'
miRNA:   3'- uGCUCGuGCUU--------GUGGGCG-------UGCGCCAG- -5'
23261 3' -58.1 NC_005259.1 + 8288 0.72 0.313576
Target:  5'- -gGuGCGCGGGCACCCGCACGgaaacgccgccuuguCGGa- -3'
miRNA:   3'- ugCuCGUGCUUGUGGGCGUGC---------------GCCag -5'
23261 3' -58.1 NC_005259.1 + 8402 0.69 0.455421
Target:  5'- gGCGAGC-CGGGcCACCuCGCugGCGa-- -3'
miRNA:   3'- -UGCUCGuGCUU-GUGG-GCGugCGCcag -5'
23261 3' -58.1 NC_005259.1 + 8645 0.67 0.587157
Target:  5'- gGCGGGCACGAggcuguggucggGCugCC--ACGCGGg- -3'
miRNA:   3'- -UGCUCGUGCU------------UGugGGcgUGCGCCag -5'
23261 3' -58.1 NC_005259.1 + 9499 0.71 0.341303
Target:  5'- gGCGAGgaACGuGCGCUCGuCGCGCGcGUCg -3'
miRNA:   3'- -UGCUCg-UGCuUGUGGGC-GUGCGC-CAG- -5'
23261 3' -58.1 NC_005259.1 + 9896 0.67 0.566139
Target:  5'- cGCGcGCgACGAGCuuucgGCCCuCGCGCuGGUCa -3'
miRNA:   3'- -UGCuCG-UGCUUG-----UGGGcGUGCG-CCAG- -5'
23261 3' -58.1 NC_005259.1 + 9958 0.67 0.55466
Target:  5'- uCGAGC-CGAcCGCCCgaccaccGCAC-CGGUCg -3'
miRNA:   3'- uGCUCGuGCUuGUGGG-------CGUGcGCCAG- -5'
23261 3' -58.1 NC_005259.1 + 10702 0.73 0.249336
Target:  5'- uUGAGCAUGGACggguaguugGCCCGCAUGauGUCg -3'
miRNA:   3'- uGCUCGUGCUUG---------UGGGCGUGCgcCAG- -5'
23261 3' -58.1 NC_005259.1 + 11320 0.67 0.555701
Target:  5'- gACGGGCGCGca-GCUCGU-CGuCGGUCa -3'
miRNA:   3'- -UGCUCGUGCuugUGGGCGuGC-GCCAG- -5'
23261 3' -58.1 NC_005259.1 + 13247 0.66 0.608316
Target:  5'- -aGGGC-CGAGCACCCG---GCGGUa -3'
miRNA:   3'- ugCUCGuGCUUGUGGGCgugCGCCAg -5'
23261 3' -58.1 NC_005259.1 + 14505 0.66 0.597723
Target:  5'- uGCccGCAUGcACACCggcgaGCACGCGGUg -3'
miRNA:   3'- -UGcuCGUGCuUGUGGg----CGUGCGCCAg -5'
23261 3' -58.1 NC_005259.1 + 16336 0.71 0.36573
Target:  5'- cCGAuGCACGGAUGCCCGCACaagacCGGa- -3'
miRNA:   3'- uGCU-CGUGCUUGUGGGCGUGc----GCCag -5'
23261 3' -58.1 NC_005259.1 + 18431 0.67 0.566139
Target:  5'- uACGcGCACGAcgccucgugcaACACCgCGCACaccgcCGGUCc -3'
miRNA:   3'- -UGCuCGUGCU-----------UGUGG-GCGUGc----GCCAG- -5'
23261 3' -58.1 NC_005259.1 + 20524 0.78 0.119922
Target:  5'- cCGAGCACGggUgcgcuGCCCGCAgCGUGGUg -3'
miRNA:   3'- uGCUCGUGCuuG-----UGGGCGU-GCGCCAg -5'
23261 3' -58.1 NC_005259.1 + 21226 0.7 0.409045
Target:  5'- cCGAGC-CGAguACGCCUcggcaGCGCGCGGg- -3'
miRNA:   3'- uGCUCGuGCU--UGUGGG-----CGUGCGCCag -5'
23261 3' -58.1 NC_005259.1 + 23285 0.69 0.464067
Target:  5'- cCGGGCGCGGugGuuggguaucggggUCCG-GCGCGGUCg -3'
miRNA:   3'- uGCUCGUGCUugU-------------GGGCgUGCGCCAG- -5'
23261 3' -58.1 NC_005259.1 + 26501 0.66 0.629551
Target:  5'- cGCGAGCuCGc-CGCCCGgcgagaagaGCGCGGUg -3'
miRNA:   3'- -UGCUCGuGCuuGUGGGCg--------UGCGCCAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.