miRNA display CGI


Results 1 - 20 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23264 3' -59 NC_005259.1 + 54198 0.66 0.619376
Target:  5'- uCAGGCGgCGGC-CCUUgacgGGCuggauACCGGGCa -3'
miRNA:   3'- -GUCUGUgGCUGcGGAG----CCG-----UGGCUCG- -5'
23264 3' -59 NC_005259.1 + 19215 0.66 0.619376
Target:  5'- gCGGGCGgCGACGUg--GGaCACCGAGUc -3'
miRNA:   3'- -GUCUGUgGCUGCGgagCC-GUGGCUCG- -5'
23264 3' -59 NC_005259.1 + 55603 0.66 0.619376
Target:  5'- -cGAUACC-ACGUCUCGcGCGCCuuGGCc -3'
miRNA:   3'- guCUGUGGcUGCGGAGC-CGUGGc-UCG- -5'
23264 3' -59 NC_005259.1 + 35794 0.66 0.618327
Target:  5'- -cGACGCCG-CGCCUCaacaggacGGUGCCGuacgaccccgcauAGCc -3'
miRNA:   3'- guCUGUGGCuGCGGAG--------CCGUGGC-------------UCG- -5'
23264 3' -59 NC_005259.1 + 43015 0.66 0.608888
Target:  5'- gAGAacaaACCGGCgauGCCgccgagcaGGcCGCCGAGCa -3'
miRNA:   3'- gUCUg---UGGCUG---CGGag------CC-GUGGCUCG- -5'
23264 3' -59 NC_005259.1 + 23454 0.66 0.60784
Target:  5'- gCAGAuugcuuuCGCaCGGgGCCUCGGCauugucgguGCCGAcGCc -3'
miRNA:   3'- -GUCU-------GUG-GCUgCGGAGCCG---------UGGCU-CG- -5'
23264 3' -59 NC_005259.1 + 51506 0.66 0.60784
Target:  5'- -cGACGCCGccgaucucgacgcGCGugaCCUCGuGCACgGGGCc -3'
miRNA:   3'- guCUGUGGC-------------UGC---GGAGC-CGUGgCUCG- -5'
23264 3' -59 NC_005259.1 + 30133 0.66 0.598418
Target:  5'- -cGGCugCGAUaCCUCgGGCagcucgACCGGGCc -3'
miRNA:   3'- guCUGugGCUGcGGAG-CCG------UGGCUCG- -5'
23264 3' -59 NC_005259.1 + 35994 0.66 0.598418
Target:  5'- -cGACGgCGAgGCCggaCuGCACCGAGg -3'
miRNA:   3'- guCUGUgGCUgCGGa--GcCGUGGCUCg -5'
23264 3' -59 NC_005259.1 + 21166 0.66 0.598418
Target:  5'- -cGuCACCGACGgCagucgggucaUCGGCG-CGAGCa -3'
miRNA:   3'- guCuGUGGCUGCgG----------AGCCGUgGCUCG- -5'
23264 3' -59 NC_005259.1 + 60671 0.66 0.598418
Target:  5'- -uGACGC--ACGCgUUCuGCACCGAGCg -3'
miRNA:   3'- guCUGUGgcUGCG-GAGcCGUGGCUCG- -5'
23264 3' -59 NC_005259.1 + 15062 0.66 0.598418
Target:  5'- -cGAUACCGugGCCacccUGGC-CCuuGAGCc -3'
miRNA:   3'- guCUGUGGCugCGGa---GCCGuGG--CUCG- -5'
23264 3' -59 NC_005259.1 + 13010 0.66 0.598418
Target:  5'- uCGGcuACGCCGcCGCC-CGGC-CCcAGCa -3'
miRNA:   3'- -GUC--UGUGGCuGCGGaGCCGuGGcUCG- -5'
23264 3' -59 NC_005259.1 + 64768 0.66 0.587974
Target:  5'- -cGACGgUG-CGCCUCGGCGgcCCGcuGCg -3'
miRNA:   3'- guCUGUgGCuGCGGAGCCGU--GGCu-CG- -5'
23264 3' -59 NC_005259.1 + 24226 0.66 0.587974
Target:  5'- -cGugACCGGCgggGCCgaGGCACgCGAGUu -3'
miRNA:   3'- guCugUGGCUG---CGGagCCGUG-GCUCG- -5'
23264 3' -59 NC_005259.1 + 34004 0.66 0.587974
Target:  5'- gAGcuGCaACCGGCuguauccgGCCUCGGCGgCGuGCg -3'
miRNA:   3'- gUC--UG-UGGCUG--------CGGAGCCGUgGCuCG- -5'
23264 3' -59 NC_005259.1 + 37353 0.66 0.581723
Target:  5'- gGGuuGCCGcugugcgaguagcucACGcCCUCGGCACCGcccGCc -3'
miRNA:   3'- gUCugUGGC---------------UGC-GGAGCCGUGGCu--CG- -5'
23264 3' -59 NC_005259.1 + 6518 0.66 0.577563
Target:  5'- -cGACGCCGuGCgcgcgacaaccgGCCUCGGgG-CGAGCg -3'
miRNA:   3'- guCUGUGGC-UG------------CGGAGCCgUgGCUCG- -5'
23264 3' -59 NC_005259.1 + 40072 0.66 0.577563
Target:  5'- -uGACccauggGCCGACGC----GCACCGAGCg -3'
miRNA:   3'- guCUG------UGGCUGCGgagcCGUGGCUCG- -5'
23264 3' -59 NC_005259.1 + 38442 0.66 0.577563
Target:  5'- -cGAgACCGAaaaUGCCgugcgagGGCACCGAGg -3'
miRNA:   3'- guCUgUGGCU---GCGGag-----CCGUGGCUCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.