Results 21 - 40 of 144 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23302 | 3' | -64 | NC_005259.1 | + | 20457 | 0.73 | 0.125064 |
Target: 5'- -aGCCGggguggcucggAUGaCCGCCGUCGACCUCGAc -3' miRNA: 3'- agCGGCa----------UGC-GGCGGCGGCUGGGGCU- -5' |
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23302 | 3' | -64 | NC_005259.1 | + | 13563 | 0.73 | 0.125064 |
Target: 5'- cCGCCG-ACcCCGCC-CCGACaCCCGAg -3' miRNA: 3'- aGCGGCaUGcGGCGGcGGCUG-GGGCU- -5' |
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23302 | 3' | -64 | NC_005259.1 | + | 19706 | 0.73 | 0.125064 |
Target: 5'- cUCGCaCGUugGCUGCCGCCGAggugaUCGAc -3' miRNA: 3'- -AGCG-GCAugCGGCGGCGGCUgg---GGCU- -5' |
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23302 | 3' | -64 | NC_005259.1 | + | 58864 | 0.73 | 0.121889 |
Target: 5'- cUCGCCGU-CGUCGUCGUCG-CCUCGGc -3' miRNA: 3'- -AGCGGCAuGCGGCGGCGGCuGGGGCU- -5' |
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23302 | 3' | -64 | NC_005259.1 | + | 51491 | 0.73 | 0.121889 |
Target: 5'- cCGCCGgggauagguCGaCGCCGCCGAUCUCGAc -3' miRNA: 3'- aGCGGCau-------GCgGCGGCGGCUGGGGCU- -5' |
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23302 | 3' | -64 | NC_005259.1 | + | 22605 | 0.73 | 0.121889 |
Target: 5'- -aGCUGcACGCCGCCGaCCGcCgCCCGAu -3' miRNA: 3'- agCGGCaUGCGGCGGC-GGCuG-GGGCU- -5' |
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23302 | 3' | -64 | NC_005259.1 | + | 56227 | 0.72 | 0.161269 |
Target: 5'- aUGCCaGU-CGUCGCCGCCGACCaCGu -3' miRNA: 3'- aGCGG-CAuGCGGCGGCGGCUGGgGCu -5' |
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23302 | 3' | -64 | NC_005259.1 | + | 56257 | 0.72 | 0.161269 |
Target: 5'- aUCGgCGgccuugaGCGCCGCCGCCcGGCCCg-- -3' miRNA: 3'- -AGCgGCa------UGCGGCGGCGG-CUGGGgcu -5' |
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23302 | 3' | -64 | NC_005259.1 | + | 21075 | 0.72 | 0.161269 |
Target: 5'- aCG-CGUAUGCCGCUGUCGACgCUGGc -3' miRNA: 3'- aGCgGCAUGCGGCGGCGGCUGgGGCU- -5' |
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23302 | 3' | -64 | NC_005259.1 | + | 48386 | 0.72 | 0.15726 |
Target: 5'- cUGuuGU-CGuuGCCGCCGACgCCCGc -3' miRNA: 3'- aGCggCAuGCggCGGCGGCUG-GGGCu -5' |
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23302 | 3' | -64 | NC_005259.1 | + | 68736 | 0.72 | 0.153343 |
Target: 5'- gUCGCCGcuUGCCGa-GCuCGACCCCGGc -3' miRNA: 3'- -AGCGGCauGCGGCggCG-GCUGGGGCU- -5' |
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23302 | 3' | -64 | NC_005259.1 | + | 45404 | 0.72 | 0.149513 |
Target: 5'- cCGCCGaGCgcgcugaugGCCGCCGCCGcuGCCUCGu -3' miRNA: 3'- aGCGGCaUG---------CGGCGGCGGC--UGGGGCu -5' |
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23302 | 3' | -64 | NC_005259.1 | + | 53249 | 0.72 | 0.142115 |
Target: 5'- cCGCCGacaccguCGCCGCCGCUGuCgCCGGu -3' miRNA: 3'- aGCGGCau-----GCGGCGGCGGCuGgGGCU- -5' |
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23302 | 3' | -64 | NC_005259.1 | + | 26406 | 0.71 | 0.1873 |
Target: 5'- aCGCCGggcgcgGCGgUGCCGCCGuagaacgcACCgCCGAg -3' miRNA: 3'- aGCGGCa-----UGCgGCGGCGGC--------UGG-GGCU- -5' |
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23302 | 3' | -64 | NC_005259.1 | + | 37156 | 0.71 | 0.1873 |
Target: 5'- -aGCCGUcacCGCCGCgccCGCCGACgCCGc -3' miRNA: 3'- agCGGCAu--GCGGCG---GCGGCUGgGGCu -5' |
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23302 | 3' | -64 | NC_005259.1 | + | 56366 | 0.71 | 0.178235 |
Target: 5'- aCGCgGUACaGCCGUCGCgGGCCgCGu -3' miRNA: 3'- aGCGgCAUG-CGGCGGCGgCUGGgGCu -5' |
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23302 | 3' | -64 | NC_005259.1 | + | 36661 | 0.71 | 0.173851 |
Target: 5'- cCGCCGcccucgcCGCCGCCGCCGGggUCuuGAc -3' miRNA: 3'- aGCGGCau-----GCGGCGGCGGCU--GGggCU- -5' |
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23302 | 3' | -64 | NC_005259.1 | + | 12276 | 0.71 | 0.173417 |
Target: 5'- gCGUCGUggaucucACGCCGCCGC--GCCUCGAu -3' miRNA: 3'- aGCGGCA-------UGCGGCGGCGgcUGGGGCU- -5' |
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23302 | 3' | -64 | NC_005259.1 | + | 275 | 0.71 | 0.173417 |
Target: 5'- gCGgUGUACGCCGCCuacgcggccucgcGCUGAUCUCGAc -3' miRNA: 3'- aGCgGCAUGCGGCGG-------------CGGCUGGGGCU- -5' |
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23302 | 3' | -64 | NC_005259.1 | + | 53155 | 0.71 | 0.191983 |
Target: 5'- -aGCCGcUACGCCGagGCCGAUCUCGc -3' miRNA: 3'- agCGGC-AUGCGGCggCGGCUGGGGCu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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