miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23311 5' -54.5 NC_005259.1 + 54737 0.66 0.827386
Target:  5'- -cCGAgGCugccgacAGCGAUC-AgGCCGCCGAc -3'
miRNA:   3'- cuGCU-CGu------UCGCUAGaUgUGGCGGCU- -5'
23311 5' -54.5 NC_005259.1 + 5874 0.66 0.827386
Target:  5'- cACGAGCAcaucaaCGAUC-AUGCCGUCGAc -3'
miRNA:   3'- cUGCUCGUuc----GCUAGaUGUGGCGGCU- -5'
23311 5' -54.5 NC_005259.1 + 43918 0.66 0.827386
Target:  5'- cGAUGGGC-AGCGAcg-ACACCGCg-- -3'
miRNA:   3'- -CUGCUCGuUCGCUagaUGUGGCGgcu -5'
23311 5' -54.5 NC_005259.1 + 46516 0.66 0.827386
Target:  5'- uACGAucccGCGAGcCGGUCggGgAUCGCCGAg -3'
miRNA:   3'- cUGCU----CGUUC-GCUAGa-UgUGGCGGCU- -5'
23311 5' -54.5 NC_005259.1 + 44953 0.66 0.823772
Target:  5'- aGCGGGCAGuGCGGUCaucgggaUGCcgagggccggugcgACUGCCGAg -3'
miRNA:   3'- cUGCUCGUU-CGCUAG-------AUG--------------UGGCGGCU- -5'
23311 5' -54.5 NC_005259.1 + 44317 0.66 0.81829
Target:  5'- uGACGAGCGuguugAGCGccgCguaGCUGCCGGg -3'
miRNA:   3'- -CUGCUCGU-----UCGCua-GaugUGGCGGCU- -5'
23311 5' -54.5 NC_005259.1 + 55569 0.66 0.81829
Target:  5'- aGCGAGCAGGaacau--CACCGCCGc -3'
miRNA:   3'- cUGCUCGUUCgcuagauGUGGCGGCu -5'
23311 5' -54.5 NC_005259.1 + 66271 0.66 0.81829
Target:  5'- -cCGGGC-GGCGG-CUcACGCCGCCa- -3'
miRNA:   3'- cuGCUCGuUCGCUaGA-UGUGGCGGcu -5'
23311 5' -54.5 NC_005259.1 + 45538 0.66 0.81829
Target:  5'- cGugGcuGCGAGCGggUUGC-UCGCCGGg -3'
miRNA:   3'- -CugCu-CGUUCGCuaGAUGuGGCGGCU- -5'
23311 5' -54.5 NC_005259.1 + 12990 0.66 0.816447
Target:  5'- cGugGuGCucGCGuucgcacucggCUACGCCGCCGc -3'
miRNA:   3'- -CugCuCGuuCGCua---------GAUGUGGCGGCu -5'
23311 5' -54.5 NC_005259.1 + 12539 0.66 0.809001
Target:  5'- -cCGAGCGAGCcccacgGCAUUGCCGGg -3'
miRNA:   3'- cuGCUCGUUCGcuaga-UGUGGCGGCU- -5'
23311 5' -54.5 NC_005259.1 + 22597 0.66 0.809001
Target:  5'- cGCGAuCAAGCug-C-ACGCCGCCGAc -3'
miRNA:   3'- cUGCUcGUUCGcuaGaUGUGGCGGCU- -5'
23311 5' -54.5 NC_005259.1 + 29576 0.66 0.809001
Target:  5'- -cUGAGCAGGuCGAUaagguCAUUGCCGAg -3'
miRNA:   3'- cuGCUCGUUC-GCUAgau--GUGGCGGCU- -5'
23311 5' -54.5 NC_005259.1 + 12236 0.66 0.79953
Target:  5'- -cCGGGCAA-UGGUC-ACACCGCCu- -3'
miRNA:   3'- cuGCUCGUUcGCUAGaUGUGGCGGcu -5'
23311 5' -54.5 NC_005259.1 + 51033 0.66 0.789887
Target:  5'- cGACGAGC-GGCGG---GCACgCGCCa- -3'
miRNA:   3'- -CUGCUCGuUCGCUagaUGUG-GCGGcu -5'
23311 5' -54.5 NC_005259.1 + 50978 0.66 0.789887
Target:  5'- cACGcGGCGAGCGGugUCgaguCACCGgCGAa -3'
miRNA:   3'- cUGC-UCGUUCGCU--AGau--GUGGCgGCU- -5'
23311 5' -54.5 NC_005259.1 + 63162 0.66 0.789887
Target:  5'- -uUGAGCAGcCGccgCaGCGCCGCCGAg -3'
miRNA:   3'- cuGCUCGUUcGCua-GaUGUGGCGGCU- -5'
23311 5' -54.5 NC_005259.1 + 44763 0.66 0.788914
Target:  5'- -uUGAGCAccgaucccgcaucGGCGGUCgagaacagACGCuCGCCGGu -3'
miRNA:   3'- cuGCUCGU-------------UCGCUAGa-------UGUG-GCGGCU- -5'
23311 5' -54.5 NC_005259.1 + 63355 0.66 0.780082
Target:  5'- uGACGGGCuugauGUGAagCUGCACguccucguCGCCGAu -3'
miRNA:   3'- -CUGCUCGuu---CGCUa-GAUGUG--------GCGGCU- -5'
23311 5' -54.5 NC_005259.1 + 37190 0.66 0.780082
Target:  5'- gGACGAGCu-GCGGccCUugccgcCACCGCCGc -3'
miRNA:   3'- -CUGCUCGuuCGCUa-GAu-----GUGGCGGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.