miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23313 5' -67.4 NC_005259.1 + 45022 0.66 0.280737
Target:  5'- -cGCGCCGCCcugcuucaugagcuGCUCGCGguacCGGGUCa -3'
miRNA:   3'- gcUGCGGCGG--------------CGGGCGCac--GCCCGGc -5'
23313 5' -67.4 NC_005259.1 + 35967 0.66 0.276294
Target:  5'- cCGugGUCGCUGUCaacgGCGggaaaccgacgGCGaGGCCGg -3'
miRNA:   3'- -GCugCGGCGGCGGg---CGCa----------CGC-CCGGC- -5'
23313 5' -67.4 NC_005259.1 + 6117 0.66 0.276294
Target:  5'- cCGAgGCCGCCGCUac---GCGGGCa- -3'
miRNA:   3'- -GCUgCGGCGGCGGgcgcaCGCCCGgc -5'
23313 5' -67.4 NC_005259.1 + 780 0.66 0.276294
Target:  5'- cCGAgGCgGCUGCCCuCGguugggugGCcaagGGGCCGg -3'
miRNA:   3'- -GCUgCGgCGGCGGGcGCa-------CG----CCCGGC- -5'
23313 5' -67.4 NC_005259.1 + 16793 0.66 0.276294
Target:  5'- uCGACGCgGUCGCguacaUCGCGcucgGGGCCGg -3'
miRNA:   3'- -GCUGCGgCGGCG-----GGCGCacg-CCCGGC- -5'
23313 5' -67.4 NC_005259.1 + 8659 0.66 0.276294
Target:  5'- uGugGUCggGCUGCCaCGCGgGCaacgGGGCCGc -3'
miRNA:   3'- gCugCGG--CGGCGG-GCGCaCG----CCCGGC- -5'
23313 5' -67.4 NC_005259.1 + 9692 0.66 0.263911
Target:  5'- uCGAgGUCGCCGCucacugggcaCCGUccuCGGGCCGg -3'
miRNA:   3'- -GCUgCGGCGGCG----------GGCGcacGCCCGGC- -5'
23313 5' -67.4 NC_005259.1 + 38727 0.66 0.263911
Target:  5'- cCGcUGCCGCCguaccggcggugGCCCGCc-GCaGGCCGg -3'
miRNA:   3'- -GCuGCGGCGG------------CGGGCGcaCGcCCGGC- -5'
23313 5' -67.4 NC_005259.1 + 17583 0.66 0.263911
Target:  5'- cCGACGCUGCCGCgCaaccucggCGCGaugacGUGGGgCGg -3'
miRNA:   3'- -GCUGCGGCGGCG-G--------GCGCa----CGCCCgGC- -5'
23313 5' -67.4 NC_005259.1 + 60541 0.66 0.263911
Target:  5'- gGACGCaGCCGCUCGuCGgcaugccCGGuGCCGa -3'
miRNA:   3'- gCUGCGgCGGCGGGC-GCac-----GCC-CGGC- -5'
23313 5' -67.4 NC_005259.1 + 57796 0.66 0.263911
Target:  5'- aGACGUugaagaccucgaCGCCGCCCGCacGCauGGCCa -3'
miRNA:   3'- gCUGCG------------GCGGCGGGCGcaCGc-CCGGc -5'
23313 5' -67.4 NC_005259.1 + 44239 0.66 0.25789
Target:  5'- --cCGCCgcGCCGCCCGCGcGCGagaaGUCGg -3'
miRNA:   3'- gcuGCGG--CGGCGGGCGCaCGCc---CGGC- -5'
23313 5' -67.4 NC_005259.1 + 62822 0.66 0.251982
Target:  5'- -aGCGCCGCuUGCCCGCGaggucgagcGCGcGGuuGa -3'
miRNA:   3'- gcUGCGGCG-GCGGGCGCa--------CGC-CCggC- -5'
23313 5' -67.4 NC_005259.1 + 14727 0.66 0.251982
Target:  5'- -cGCGCuCGUCGCCgagauguaCGCGcugGcCGGGCCGg -3'
miRNA:   3'- gcUGCG-GCGGCGG--------GCGCa--C-GCCCGGC- -5'
23313 5' -67.4 NC_005259.1 + 30085 0.66 0.246186
Target:  5'- cCGAUGUCGaCCGCCCuCGU-CGGaGCUGu -3'
miRNA:   3'- -GCUGCGGC-GGCGGGcGCAcGCC-CGGC- -5'
23313 5' -67.4 NC_005259.1 + 60145 0.66 0.246186
Target:  5'- gCGGCcuugGCCGCCGCCUcaGCGgccucaCGGGCgGc -3'
miRNA:   3'- -GCUG----CGGCGGCGGG--CGCac----GCCCGgC- -5'
23313 5' -67.4 NC_005259.1 + 56270 0.66 0.245612
Target:  5'- -aGCGCCGCCGCCCGgccCGUaucgGCaccagcagaccacGuGGCCGg -3'
miRNA:   3'- gcUGCGGCGGCGGGC---GCA----CG-------------C-CCGGC- -5'
23313 5' -67.4 NC_005259.1 + 12217 0.67 0.240501
Target:  5'- cCGGCGCa-CCGCCCGCuG-GCcGGGCa- -3'
miRNA:   3'- -GCUGCGgcGGCGGGCG-CaCG-CCCGgc -5'
23313 5' -67.4 NC_005259.1 + 41853 0.67 0.238816
Target:  5'- uCGACGgUGUCccacucgacgggcaGCaCCGUG-GCGGGCCGa -3'
miRNA:   3'- -GCUGCgGCGG--------------CG-GGCGCaCGCCCGGC- -5'
23313 5' -67.4 NC_005259.1 + 37537 0.67 0.234925
Target:  5'- uCGG-GCCGCCGUugUUGCGUGUGGuGuCCGa -3'
miRNA:   3'- -GCUgCGGCGGCG--GGCGCACGCC-C-GGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.