Results 1 - 20 of 55 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23316 | 3' | -53.5 | NC_005259.1 | + | 46751 | 0.66 | 0.862157 |
Target: 5'- cGAUGgcugcGCCGAcACCUgCGCCGACaGCc -3' miRNA: 3'- uCUAUa----CGGUUcUGGA-GCGGCUGcUG- -5' |
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23316 | 3' | -53.5 | NC_005259.1 | + | 16561 | 0.66 | 0.862157 |
Target: 5'- gAGAUcccGCCcaccGGGCagaUCGCCGAgGACa -3' miRNA: 3'- -UCUAua-CGGu---UCUGg--AGCGGCUgCUG- -5' |
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23316 | 3' | -53.5 | NC_005259.1 | + | 45309 | 0.66 | 0.862157 |
Target: 5'- cGGUGacGCCGAGGCCgcCGCCGAacuGCg -3' miRNA: 3'- uCUAUa-CGGUUCUGGa-GCGGCUgc-UG- -5' |
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23316 | 3' | -53.5 | NC_005259.1 | + | 4467 | 0.66 | 0.853864 |
Target: 5'- -uAUggGCCAAGGCCaUCGgCgGugGACc -3' miRNA: 3'- ucUAuaCGGUUCUGG-AGC-GgCugCUG- -5' |
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23316 | 3' | -53.5 | NC_005259.1 | + | 17840 | 0.66 | 0.853864 |
Target: 5'- cGGGUggGCCGAGGCCaCcCCGugGuCa -3' miRNA: 3'- -UCUAuaCGGUUCUGGaGcGGCugCuG- -5' |
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23316 | 3' | -53.5 | NC_005259.1 | + | 52136 | 0.66 | 0.853864 |
Target: 5'- -----cGCCGuccGGcACCUCGCCGA-GGCa -3' miRNA: 3'- ucuauaCGGU---UC-UGGAGCGGCUgCUG- -5' |
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23316 | 3' | -53.5 | NC_005259.1 | + | 23997 | 0.66 | 0.85133 |
Target: 5'- cGGUG-GCCAAGACaCUCgaggacaccacgggGCUGGCGAa -3' miRNA: 3'- uCUAUaCGGUUCUG-GAG--------------CGGCUGCUg -5' |
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23316 | 3' | -53.5 | NC_005259.1 | + | 55406 | 0.66 | 0.845337 |
Target: 5'- uGGUgAUGCCGuaguacagcAGcACCgaGCCGACGACg -3' miRNA: 3'- uCUA-UACGGU---------UC-UGGagCGGCUGCUG- -5' |
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23316 | 3' | -53.5 | NC_005259.1 | + | 25952 | 0.66 | 0.845337 |
Target: 5'- ---gGUGCCc-GGCC-CGCCGACGcCu -3' miRNA: 3'- ucuaUACGGuuCUGGaGCGGCUGCuG- -5' |
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23316 | 3' | -53.5 | NC_005259.1 | + | 30484 | 0.66 | 0.845337 |
Target: 5'- gAGGUAgGCCAgacccggcgAGACCUUGCgCGAUGu- -3' miRNA: 3'- -UCUAUaCGGU---------UCUGGAGCG-GCUGCug -5' |
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23316 | 3' | -53.5 | NC_005259.1 | + | 2221 | 0.66 | 0.8357 |
Target: 5'- cGAgc-GCCc-GGCCUCGCCauuugucGGCGACa -3' miRNA: 3'- uCUauaCGGuuCUGGAGCGG-------CUGCUG- -5' |
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23316 | 3' | -53.5 | NC_005259.1 | + | 4100 | 0.67 | 0.818451 |
Target: 5'- gGGAcugAUGCCAA-ACCUCGgCGGCcucGACg -3' miRNA: 3'- -UCUa--UACGGUUcUGGAGCgGCUG---CUG- -5' |
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23316 | 3' | -53.5 | NC_005259.1 | + | 63529 | 0.67 | 0.818451 |
Target: 5'- uGAUGUGCU-GGACCUuuucgaggUGCuCGGCGGCc -3' miRNA: 3'- uCUAUACGGuUCUGGA--------GCG-GCUGCUG- -5' |
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23316 | 3' | -53.5 | NC_005259.1 | + | 27903 | 0.67 | 0.815661 |
Target: 5'- uGGGgucGCCGAGACCgCGCgggugguagcgguuCGGCGACc -3' miRNA: 3'- -UCUauaCGGUUCUGGaGCG--------------GCUGCUG- -5' |
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23316 | 3' | -53.5 | NC_005259.1 | + | 45111 | 0.67 | 0.809084 |
Target: 5'- cGGUcggGCCGAGAgUggUGCCGACGAg -3' miRNA: 3'- uCUAua-CGGUUCUgGa-GCGGCUGCUg -5' |
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23316 | 3' | -53.5 | NC_005259.1 | + | 52178 | 0.67 | 0.809084 |
Target: 5'- ---cAUGCagCAGGACCgCGCCGACaACg -3' miRNA: 3'- ucuaUACG--GUUCUGGaGCGGCUGcUG- -5' |
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23316 | 3' | -53.5 | NC_005259.1 | + | 31876 | 0.67 | 0.799532 |
Target: 5'- -uGUcgGUCGuGACCUCGCCGGucucaaggccCGGCg -3' miRNA: 3'- ucUAuaCGGUuCUGGAGCGGCU----------GCUG- -5' |
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23316 | 3' | -53.5 | NC_005259.1 | + | 39356 | 0.67 | 0.799532 |
Target: 5'- cGAcGUGCC-GGGCCUCGUCGGgaACg -3' miRNA: 3'- uCUaUACGGuUCUGGAGCGGCUgcUG- -5' |
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23316 | 3' | -53.5 | NC_005259.1 | + | 36871 | 0.67 | 0.789804 |
Target: 5'- ----uUGCUGGcACCgcccgCGCCGACGACg -3' miRNA: 3'- ucuauACGGUUcUGGa----GCGGCUGCUG- -5' |
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23316 | 3' | -53.5 | NC_005259.1 | + | 12140 | 0.67 | 0.789804 |
Target: 5'- cGGGUcUGCUuucuuGAUCacCGCCGACGGCa -3' miRNA: 3'- -UCUAuACGGuu---CUGGa-GCGGCUGCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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