miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23316 3' -53.5 NC_005259.1 + 16561 0.66 0.862157
Target:  5'- gAGAUcccGCCcaccGGGCagaUCGCCGAgGACa -3'
miRNA:   3'- -UCUAua-CGGu---UCUGg--AGCGGCUgCUG- -5'
23316 3' -53.5 NC_005259.1 + 45309 0.66 0.862157
Target:  5'- cGGUGacGCCGAGGCCgcCGCCGAacuGCg -3'
miRNA:   3'- uCUAUa-CGGUUCUGGa-GCGGCUgc-UG- -5'
23316 3' -53.5 NC_005259.1 + 46751 0.66 0.862157
Target:  5'- cGAUGgcugcGCCGAcACCUgCGCCGACaGCc -3'
miRNA:   3'- uCUAUa----CGGUUcUGGA-GCGGCUGcUG- -5'
23316 3' -53.5 NC_005259.1 + 4467 0.66 0.853864
Target:  5'- -uAUggGCCAAGGCCaUCGgCgGugGACc -3'
miRNA:   3'- ucUAuaCGGUUCUGG-AGC-GgCugCUG- -5'
23316 3' -53.5 NC_005259.1 + 17840 0.66 0.853864
Target:  5'- cGGGUggGCCGAGGCCaCcCCGugGuCa -3'
miRNA:   3'- -UCUAuaCGGUUCUGGaGcGGCugCuG- -5'
23316 3' -53.5 NC_005259.1 + 52136 0.66 0.853864
Target:  5'- -----cGCCGuccGGcACCUCGCCGA-GGCa -3'
miRNA:   3'- ucuauaCGGU---UC-UGGAGCGGCUgCUG- -5'
23316 3' -53.5 NC_005259.1 + 23997 0.66 0.85133
Target:  5'- cGGUG-GCCAAGACaCUCgaggacaccacgggGCUGGCGAa -3'
miRNA:   3'- uCUAUaCGGUUCUG-GAG--------------CGGCUGCUg -5'
23316 3' -53.5 NC_005259.1 + 55406 0.66 0.845337
Target:  5'- uGGUgAUGCCGuaguacagcAGcACCgaGCCGACGACg -3'
miRNA:   3'- uCUA-UACGGU---------UC-UGGagCGGCUGCUG- -5'
23316 3' -53.5 NC_005259.1 + 25952 0.66 0.845337
Target:  5'- ---gGUGCCc-GGCC-CGCCGACGcCu -3'
miRNA:   3'- ucuaUACGGuuCUGGaGCGGCUGCuG- -5'
23316 3' -53.5 NC_005259.1 + 30484 0.66 0.845337
Target:  5'- gAGGUAgGCCAgacccggcgAGACCUUGCgCGAUGu- -3'
miRNA:   3'- -UCUAUaCGGU---------UCUGGAGCG-GCUGCug -5'
23316 3' -53.5 NC_005259.1 + 2221 0.66 0.8357
Target:  5'- cGAgc-GCCc-GGCCUCGCCauuugucGGCGACa -3'
miRNA:   3'- uCUauaCGGuuCUGGAGCGG-------CUGCUG- -5'
23316 3' -53.5 NC_005259.1 + 4100 0.67 0.818451
Target:  5'- gGGAcugAUGCCAA-ACCUCGgCGGCcucGACg -3'
miRNA:   3'- -UCUa--UACGGUUcUGGAGCgGCUG---CUG- -5'
23316 3' -53.5 NC_005259.1 + 63529 0.67 0.818451
Target:  5'- uGAUGUGCU-GGACCUuuucgaggUGCuCGGCGGCc -3'
miRNA:   3'- uCUAUACGGuUCUGGA--------GCG-GCUGCUG- -5'
23316 3' -53.5 NC_005259.1 + 27903 0.67 0.815661
Target:  5'- uGGGgucGCCGAGACCgCGCgggugguagcgguuCGGCGACc -3'
miRNA:   3'- -UCUauaCGGUUCUGGaGCG--------------GCUGCUG- -5'
23316 3' -53.5 NC_005259.1 + 52178 0.67 0.809084
Target:  5'- ---cAUGCagCAGGACCgCGCCGACaACg -3'
miRNA:   3'- ucuaUACG--GUUCUGGaGCGGCUGcUG- -5'
23316 3' -53.5 NC_005259.1 + 45111 0.67 0.809084
Target:  5'- cGGUcggGCCGAGAgUggUGCCGACGAg -3'
miRNA:   3'- uCUAua-CGGUUCUgGa-GCGGCUGCUg -5'
23316 3' -53.5 NC_005259.1 + 39356 0.67 0.799532
Target:  5'- cGAcGUGCC-GGGCCUCGUCGGgaACg -3'
miRNA:   3'- uCUaUACGGuUCUGGAGCGGCUgcUG- -5'
23316 3' -53.5 NC_005259.1 + 31876 0.67 0.799532
Target:  5'- -uGUcgGUCGuGACCUCGCCGGucucaaggccCGGCg -3'
miRNA:   3'- ucUAuaCGGUuCUGGAGCGGCU----------GCUG- -5'
23316 3' -53.5 NC_005259.1 + 55873 0.67 0.789804
Target:  5'- -----cGCCGAGcGCCUCGCCc-CGACc -3'
miRNA:   3'- ucuauaCGGUUC-UGGAGCGGcuGCUG- -5'
23316 3' -53.5 NC_005259.1 + 12140 0.67 0.789804
Target:  5'- cGGGUcUGCUuucuuGAUCacCGCCGACGGCa -3'
miRNA:   3'- -UCUAuACGGuu---CUGGa-GCGGCUGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.