miRNA display CGI


Results 1 - 20 of 223 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23325 5' -63.2 NC_005259.1 + 2779 0.65 0.425033
Target:  5'- cGAGCCGACgcaccucgacugguCGCacgucaaCCGgaucuccuagucACC-CCGCCACCa -3'
miRNA:   3'- -CUCGGCUG--------------GCG-------GGC------------UGGuGGCGGUGG- -5'
23325 5' -63.2 NC_005259.1 + 3530 0.66 0.419753
Target:  5'- cGGGCaCGACa--CCGACCACaGCCAgauCCg -3'
miRNA:   3'- -CUCG-GCUGgcgGGCUGGUGgCGGU---GG- -5'
23325 5' -63.2 NC_005259.1 + 29451 0.66 0.419753
Target:  5'- cAGCCaGcgugaccuuGCCGCCCGGCUcggcauggACCGCCGu- -3'
miRNA:   3'- cUCGG-C---------UGGCGGGCUGG--------UGGCGGUgg -5'
23325 5' -63.2 NC_005259.1 + 37420 0.66 0.419753
Target:  5'- -cGCCGcCCGCCguGCCAUUGgCCAUCg -3'
miRNA:   3'- cuCGGCuGGCGGgcUGGUGGC-GGUGG- -5'
23325 5' -63.2 NC_005259.1 + 15500 0.66 0.419753
Target:  5'- cGAGaaGACC-CUCGGCUACC-UCACCa -3'
miRNA:   3'- -CUCggCUGGcGGGCUGGUGGcGGUGG- -5'
23325 5' -63.2 NC_005259.1 + 17876 0.66 0.419753
Target:  5'- uGAGCCgcucgguugGACC-CCCG--CACCGCgCGCCg -3'
miRNA:   3'- -CUCGG---------CUGGcGGGCugGUGGCG-GUGG- -5'
23325 5' -63.2 NC_005259.1 + 4360 0.66 0.419753
Target:  5'- -cGCCGGacggcaCGCCCGugCcCUGCuCAUCg -3'
miRNA:   3'- cuCGGCUg-----GCGGGCugGuGGCG-GUGG- -5'
23325 5' -63.2 NC_005259.1 + 23425 0.66 0.419753
Target:  5'- uGGCgGcGCaagcaGCCCG-CCACCGCCAa- -3'
miRNA:   3'- cUCGgC-UGg----CGGGCuGGUGGCGGUgg -5'
23325 5' -63.2 NC_005259.1 + 52458 0.66 0.419753
Target:  5'- cGGCgGAUgGCa-GACCACCGcCCGCg -3'
miRNA:   3'- cUCGgCUGgCGggCUGGUGGC-GGUGg -5'
23325 5' -63.2 NC_005259.1 + 54734 0.66 0.419753
Target:  5'- uAGCCGagGCUGCCgacagCGAUCagGCCGCCgACCc -3'
miRNA:   3'- cUCGGC--UGGCGG-----GCUGG--UGGCGG-UGG- -5'
23325 5' -63.2 NC_005259.1 + 44189 0.66 0.419753
Target:  5'- aAGUCGACCGCUCGcgucguauCCGCgACCc -3'
miRNA:   3'- cUCGGCUGGCGGGCuggu----GGCGgUGG- -5'
23325 5' -63.2 NC_005259.1 + 22547 0.66 0.418877
Target:  5'- cAGuCCGACCucGCCgaggucaUGGaaGCCGCCACCg -3'
miRNA:   3'- cUC-GGCUGG--CGG-------GCUggUGGCGGUGG- -5'
23325 5' -63.2 NC_005259.1 + 11850 0.66 0.414513
Target:  5'- --uCCGACCuGCCacccgucggcgaacgUGACCGCCG-CACCg -3'
miRNA:   3'- cucGGCUGG-CGG---------------GCUGGUGGCgGUGG- -5'
23325 5' -63.2 NC_005259.1 + 52233 0.66 0.411041
Target:  5'- -cGCUGAUCaCCC-ACUACCGCCcgGCCc -3'
miRNA:   3'- cuCGGCUGGcGGGcUGGUGGCGG--UGG- -5'
23325 5' -63.2 NC_005259.1 + 37526 0.66 0.411041
Target:  5'- cGAGaaGAUCGUCgGGCCGCCGUugUugCg -3'
miRNA:   3'- -CUCggCUGGCGGgCUGGUGGCG--GugG- -5'
23325 5' -63.2 NC_005259.1 + 22116 0.66 0.411041
Target:  5'- aGGUCGACCcCUCGAUC-CCGCgcaGCCa -3'
miRNA:   3'- cUCGGCUGGcGGGCUGGuGGCGg--UGG- -5'
23325 5' -63.2 NC_005259.1 + 36782 0.66 0.411041
Target:  5'- -uGCCG-CCGuCCUGACCGCuCGCguCg -3'
miRNA:   3'- cuCGGCuGGC-GGGCUGGUG-GCGguGg -5'
23325 5' -63.2 NC_005259.1 + 47276 0.66 0.411041
Target:  5'- cAGCgcACCGagcaGACCGCCGUCGCCg -3'
miRNA:   3'- cUCGgcUGGCggg-CUGGUGGCGGUGG- -5'
23325 5' -63.2 NC_005259.1 + 9790 0.66 0.402443
Target:  5'- -uGCCcgGugUGCCCGcucgcgccACUACCGCCcgcACCg -3'
miRNA:   3'- cuCGG--CugGCGGGC--------UGGUGGCGG---UGG- -5'
23325 5' -63.2 NC_005259.1 + 57703 0.66 0.402443
Target:  5'- -uGCCGGgcUUGCCCGACUcgcgggucuGCCaGUCACCc -3'
miRNA:   3'- cuCGGCU--GGCGGGCUGG---------UGG-CGGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.