Results 1 - 20 of 223 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23325 | 5' | -63.2 | NC_005259.1 | + | 2779 | 0.65 | 0.425033 |
Target: 5'- cGAGCCGACgcaccucgacugguCGCacgucaaCCGgaucuccuagucACC-CCGCCACCa -3' miRNA: 3'- -CUCGGCUG--------------GCG-------GGC------------UGGuGGCGGUGG- -5' |
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23325 | 5' | -63.2 | NC_005259.1 | + | 54734 | 0.66 | 0.419753 |
Target: 5'- uAGCCGagGCUGCCgacagCGAUCagGCCGCCgACCc -3' miRNA: 3'- cUCGGC--UGGCGG-----GCUGG--UGGCGG-UGG- -5' |
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23325 | 5' | -63.2 | NC_005259.1 | + | 44189 | 0.66 | 0.419753 |
Target: 5'- aAGUCGACCGCUCGcgucguauCCGCgACCc -3' miRNA: 3'- cUCGGCUGGCGGGCuggu----GGCGgUGG- -5' |
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23325 | 5' | -63.2 | NC_005259.1 | + | 29451 | 0.66 | 0.419753 |
Target: 5'- cAGCCaGcgugaccuuGCCGCCCGGCUcggcauggACCGCCGu- -3' miRNA: 3'- cUCGG-C---------UGGCGGGCUGG--------UGGCGGUgg -5' |
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23325 | 5' | -63.2 | NC_005259.1 | + | 3530 | 0.66 | 0.419753 |
Target: 5'- cGGGCaCGACa--CCGACCACaGCCAgauCCg -3' miRNA: 3'- -CUCG-GCUGgcgGGCUGGUGgCGGU---GG- -5' |
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23325 | 5' | -63.2 | NC_005259.1 | + | 37420 | 0.66 | 0.419753 |
Target: 5'- -cGCCGcCCGCCguGCCAUUGgCCAUCg -3' miRNA: 3'- cuCGGCuGGCGGgcUGGUGGC-GGUGG- -5' |
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23325 | 5' | -63.2 | NC_005259.1 | + | 15500 | 0.66 | 0.419753 |
Target: 5'- cGAGaaGACC-CUCGGCUACC-UCACCa -3' miRNA: 3'- -CUCggCUGGcGGGCUGGUGGcGGUGG- -5' |
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23325 | 5' | -63.2 | NC_005259.1 | + | 17876 | 0.66 | 0.419753 |
Target: 5'- uGAGCCgcucgguugGACC-CCCG--CACCGCgCGCCg -3' miRNA: 3'- -CUCGG---------CUGGcGGGCugGUGGCG-GUGG- -5' |
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23325 | 5' | -63.2 | NC_005259.1 | + | 4360 | 0.66 | 0.419753 |
Target: 5'- -cGCCGGacggcaCGCCCGugCcCUGCuCAUCg -3' miRNA: 3'- cuCGGCUg-----GCGGGCugGuGGCG-GUGG- -5' |
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23325 | 5' | -63.2 | NC_005259.1 | + | 23425 | 0.66 | 0.419753 |
Target: 5'- uGGCgGcGCaagcaGCCCG-CCACCGCCAa- -3' miRNA: 3'- cUCGgC-UGg----CGGGCuGGUGGCGGUgg -5' |
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23325 | 5' | -63.2 | NC_005259.1 | + | 52458 | 0.66 | 0.419753 |
Target: 5'- cGGCgGAUgGCa-GACCACCGcCCGCg -3' miRNA: 3'- cUCGgCUGgCGggCUGGUGGC-GGUGg -5' |
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23325 | 5' | -63.2 | NC_005259.1 | + | 22547 | 0.66 | 0.418877 |
Target: 5'- cAGuCCGACCucGCCgaggucaUGGaaGCCGCCACCg -3' miRNA: 3'- cUC-GGCUGG--CGG-------GCUggUGGCGGUGG- -5' |
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23325 | 5' | -63.2 | NC_005259.1 | + | 11850 | 0.66 | 0.414513 |
Target: 5'- --uCCGACCuGCCacccgucggcgaacgUGACCGCCG-CACCg -3' miRNA: 3'- cucGGCUGG-CGG---------------GCUGGUGGCgGUGG- -5' |
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23325 | 5' | -63.2 | NC_005259.1 | + | 47276 | 0.66 | 0.411041 |
Target: 5'- cAGCgcACCGagcaGACCGCCGUCGCCg -3' miRNA: 3'- cUCGgcUGGCggg-CUGGUGGCGGUGG- -5' |
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23325 | 5' | -63.2 | NC_005259.1 | + | 22116 | 0.66 | 0.411041 |
Target: 5'- aGGUCGACCcCUCGAUC-CCGCgcaGCCa -3' miRNA: 3'- cUCGGCUGGcGGGCUGGuGGCGg--UGG- -5' |
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23325 | 5' | -63.2 | NC_005259.1 | + | 36782 | 0.66 | 0.411041 |
Target: 5'- -uGCCG-CCGuCCUGACCGCuCGCguCg -3' miRNA: 3'- cuCGGCuGGC-GGGCUGGUG-GCGguGg -5' |
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23325 | 5' | -63.2 | NC_005259.1 | + | 37526 | 0.66 | 0.411041 |
Target: 5'- cGAGaaGAUCGUCgGGCCGCCGUugUugCg -3' miRNA: 3'- -CUCggCUGGCGGgCUGGUGGCG--GugG- -5' |
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23325 | 5' | -63.2 | NC_005259.1 | + | 52233 | 0.66 | 0.411041 |
Target: 5'- -cGCUGAUCaCCC-ACUACCGCCcgGCCc -3' miRNA: 3'- cuCGGCUGGcGGGcUGGUGGCGG--UGG- -5' |
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23325 | 5' | -63.2 | NC_005259.1 | + | 9790 | 0.66 | 0.402443 |
Target: 5'- -uGCCcgGugUGCCCGcucgcgccACUACCGCCcgcACCg -3' miRNA: 3'- cuCGG--CugGCGGGC--------UGGUGGCGG---UGG- -5' |
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23325 | 5' | -63.2 | NC_005259.1 | + | 44230 | 0.66 | 0.402443 |
Target: 5'- cGAGCU---CGCCCG-CCG-CGCCGCCc -3' miRNA: 3'- -CUCGGcugGCGGGCuGGUgGCGGUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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