miRNA display CGI


Results 1 - 20 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23326 3' -64.4 NC_005259.1 + 62156 0.66 0.367385
Target:  5'- -gGCCGCa-GCACCuCgGGGUGC-GCg -3'
miRNA:   3'- gaUGGCGggCGUGGcGgCCCACGcCG- -5'
23326 3' -64.4 NC_005259.1 + 15383 0.66 0.367385
Target:  5'- gCUGCCGCaaCCGUgGCCGCgcacucccaaGGGUGCGcuGCg -3'
miRNA:   3'- -GAUGGCG--GGCG-UGGCGg---------CCCACGC--CG- -5'
23326 3' -64.4 NC_005259.1 + 33257 0.66 0.359452
Target:  5'- --uCUGCCCGCAgCGCCGa-UGCuGCg -3'
miRNA:   3'- gauGGCGGGCGUgGCGGCccACGcCG- -5'
23326 3' -64.4 NC_005259.1 + 35842 0.66 0.359452
Target:  5'- -cACCGCCCGCgagcacagguccGCCGCCGcGUccaccGCaGCc -3'
miRNA:   3'- gaUGGCGGGCG------------UGGCGGCcCA-----CGcCG- -5'
23326 3' -64.4 NC_005259.1 + 29878 0.66 0.359452
Target:  5'- -cACCGCCCGa--UGUCGaGGU-CGGCa -3'
miRNA:   3'- gaUGGCGGGCgugGCGGC-CCAcGCCG- -5'
23326 3' -64.4 NC_005259.1 + 22213 0.66 0.359452
Target:  5'- -gGCCaCCgCGCACCGCCGcgaGGcUGuCGGUu -3'
miRNA:   3'- gaUGGcGG-GCGUGGCGGC---CC-AC-GCCG- -5'
23326 3' -64.4 NC_005259.1 + 64782 0.66 0.359452
Target:  5'- -gGCgGCCCGCugCGaCUGGcUGUGuGCc -3'
miRNA:   3'- gaUGgCGGGCGugGC-GGCCcACGC-CG- -5'
23326 3' -64.4 NC_005259.1 + 37515 0.66 0.357096
Target:  5'- aUGCUGCCCGaCgagaagaucgucggGCCGCCGuuguugcGUGUGGUg -3'
miRNA:   3'- gAUGGCGGGC-G--------------UGGCGGCc------CACGCCG- -5'
23326 3' -64.4 NC_005259.1 + 27287 0.66 0.35164
Target:  5'- -aGCCGCCgcUGCACgCGCCGGacaCGGUc -3'
miRNA:   3'- gaUGGCGG--GCGUG-GCGGCCcacGCCG- -5'
23326 3' -64.4 NC_005259.1 + 19861 0.66 0.35164
Target:  5'- gUGgCGCUCGCGcCCGCCGGGaucgccgacGCcGCg -3'
miRNA:   3'- gAUgGCGGGCGU-GGCGGCCCa--------CGcCG- -5'
23326 3' -64.4 NC_005259.1 + 30799 0.66 0.35164
Target:  5'- gUACCGCCgGaaCACCugaGUCGGGUagucCGGCg -3'
miRNA:   3'- gAUGGCGGgC--GUGG---CGGCCCAc---GCCG- -5'
23326 3' -64.4 NC_005259.1 + 36662 0.66 0.35164
Target:  5'- -cGCCGCCCucgccgcCGCCGCCGGG-GUc-- -3'
miRNA:   3'- gaUGGCGGGc------GUGGCGGCCCaCGccg -5'
23326 3' -64.4 NC_005259.1 + 37276 0.66 0.34701
Target:  5'- -gGCCGCCCggcaggacuugcaugGCGgugcCCGCCGGGU-CaGCa -3'
miRNA:   3'- gaUGGCGGG---------------CGU----GGCGGCCCAcGcCG- -5'
23326 3' -64.4 NC_005259.1 + 52136 0.66 0.343948
Target:  5'- -cGCCGUCCgGCACCucGCCGaGGcagGCaGCg -3'
miRNA:   3'- gaUGGCGGG-CGUGG--CGGC-CCa--CGcCG- -5'
23326 3' -64.4 NC_005259.1 + 13429 0.66 0.343948
Target:  5'- -cGCCGCCgGgGCCGCgcuaGGcGUgaccgucggcGCGGCg -3'
miRNA:   3'- gaUGGCGGgCgUGGCGg---CC-CA----------CGCCG- -5'
23326 3' -64.4 NC_005259.1 + 61383 0.66 0.343948
Target:  5'- gCUGCCacacGCCCGaUGCCGUCGGuGUccucGCGGg -3'
miRNA:   3'- -GAUGG----CGGGC-GUGGCGGCC-CA----CGCCg -5'
23326 3' -64.4 NC_005259.1 + 45162 0.66 0.336379
Target:  5'- -gGCCGCCCuuggccuuguuGCG-CGCCGaGGUcagcGCGGUg -3'
miRNA:   3'- gaUGGCGGG-----------CGUgGCGGC-CCA----CGCCG- -5'
23326 3' -64.4 NC_005259.1 + 64985 0.66 0.336379
Target:  5'- aCUGuuGCCCGUugCuGUCGGGUaagaucGUGGa -3'
miRNA:   3'- -GAUggCGGGCGugG-CGGCCCA------CGCCg -5'
23326 3' -64.4 NC_005259.1 + 36970 0.66 0.336379
Target:  5'- -cGCCucgGCCCGCACCGCCGaacGUcGCa -3'
miRNA:   3'- gaUGG---CGGGCGUGGCGGCccaCGcCG- -5'
23326 3' -64.4 NC_005259.1 + 65863 0.66 0.328932
Target:  5'- cCU-CCGUCUGCcCCGgUGGG-GCGGUc -3'
miRNA:   3'- -GAuGGCGGGCGuGGCgGCCCaCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.