miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23327 5' -54.7 NC_005259.1 + 29852 0.65 0.826373
Target:  5'- -uCGCuCGcUGUCGGGCAucgaacuGCCAC-CGCc -3'
miRNA:   3'- guGUG-GCaACAGCUCGU-------CGGUGuGCG- -5'
23327 5' -54.7 NC_005259.1 + 28961 0.66 0.81821
Target:  5'- gCAuCGCCGagGUCGGuGCcgaGGCCGCgaGCGCc -3'
miRNA:   3'- -GU-GUGGCaaCAGCU-CG---UCGGUG--UGCG- -5'
23327 5' -54.7 NC_005259.1 + 48380 0.66 0.80896
Target:  5'- aCGCGuCUGUUGUCGuuGCcGCCG-ACGCc -3'
miRNA:   3'- -GUGU-GGCAACAGCu-CGuCGGUgUGCG- -5'
23327 5' -54.7 NC_005259.1 + 34765 0.66 0.80896
Target:  5'- gGCAUCGUcGgCGAGCAGCacuGCAaGCa -3'
miRNA:   3'- gUGUGGCAaCaGCUCGUCGg--UGUgCG- -5'
23327 5' -54.7 NC_005259.1 + 27504 0.66 0.80896
Target:  5'- aCGCGCCGagGUCGAcGUGuCCgcACACGCc -3'
miRNA:   3'- -GUGUGGCaaCAGCU-CGUcGG--UGUGCG- -5'
23327 5' -54.7 NC_005259.1 + 66266 0.66 0.80896
Target:  5'- cCGCGCCGgg--CG-GCGGCU-CACGCc -3'
miRNA:   3'- -GUGUGGCaacaGCuCGUCGGuGUGCG- -5'
23327 5' -54.7 NC_005259.1 + 1586 0.66 0.80896
Target:  5'- cCACACCGagGUCGAGgucagGGCacaAUugGCc -3'
miRNA:   3'- -GUGUGGCaaCAGCUCg----UCGg--UGugCG- -5'
23327 5' -54.7 NC_005259.1 + 45891 0.66 0.789927
Target:  5'- cCGCugUGUUGUucggucggCGGGCA-CCGCugGUa -3'
miRNA:   3'- -GUGugGCAACA--------GCUCGUcGGUGugCG- -5'
23327 5' -54.7 NC_005259.1 + 5721 0.66 0.789927
Target:  5'- aGCGCCGga--CG-GCGGCCAUucuCGCg -3'
miRNA:   3'- gUGUGGCaacaGCuCGUCGGUGu--GCG- -5'
23327 5' -54.7 NC_005259.1 + 59384 0.66 0.786041
Target:  5'- cCGCACCGUgccuccgcgcgCGAGCGuGaCCuCGCGCa -3'
miRNA:   3'- -GUGUGGCAaca--------GCUCGU-C-GGuGUGCG- -5'
23327 5' -54.7 NC_005259.1 + 26345 0.66 0.780165
Target:  5'- gCACGCCc---UCGGGCcgAGCUGCGCGUa -3'
miRNA:   3'- -GUGUGGcaacAGCUCG--UCGGUGUGCG- -5'
23327 5' -54.7 NC_005259.1 + 17350 0.66 0.780165
Target:  5'- -uCGCCGUcgagGUCG-GCGGCUcgGCGCu -3'
miRNA:   3'- guGUGGCAa---CAGCuCGUCGGugUGCG- -5'
23327 5' -54.7 NC_005259.1 + 62027 0.66 0.779181
Target:  5'- uCGCGCUGUgUGUCGAcGUaguccucGGCCcgcuCGCGCa -3'
miRNA:   3'- -GUGUGGCA-ACAGCU-CG-------UCGGu---GUGCG- -5'
23327 5' -54.7 NC_005259.1 + 48470 0.67 0.770254
Target:  5'- gCGCGCCGg-GUCGcGuCGGCCuguuccucgACGCGCu -3'
miRNA:   3'- -GUGUGGCaaCAGCuC-GUCGG---------UGUGCG- -5'
23327 5' -54.7 NC_005259.1 + 9125 0.67 0.770254
Target:  5'- aCGCGCCccgGUaCGGGCAGCCguGCuCGUg -3'
miRNA:   3'- -GUGUGGcaaCA-GCUCGUCGG--UGuGCG- -5'
23327 5' -54.7 NC_005259.1 + 46903 0.67 0.770254
Target:  5'- aGCGCCc--GcCGAGCAGuCCGCGUGCg -3'
miRNA:   3'- gUGUGGcaaCaGCUCGUC-GGUGUGCG- -5'
23327 5' -54.7 NC_005259.1 + 20614 0.67 0.769255
Target:  5'- gCGCACCGcgaccgUGUCGAuGCGuucguucGCgACACGUu -3'
miRNA:   3'- -GUGUGGCa-----ACAGCU-CGU-------CGgUGUGCG- -5'
23327 5' -54.7 NC_005259.1 + 60503 0.67 0.760203
Target:  5'- aCGCGCCGguguUGUCGuAGUGcGCCAUggccgggccgggACGCa -3'
miRNA:   3'- -GUGUGGCa---ACAGC-UCGU-CGGUG------------UGCG- -5'
23327 5' -54.7 NC_005259.1 + 22276 0.67 0.760203
Target:  5'- uCACGCCGggGcCGAGgGuuuCCACACGa -3'
miRNA:   3'- -GUGUGGCaaCaGCUCgUc--GGUGUGCg -5'
23327 5' -54.7 NC_005259.1 + 63665 0.67 0.760203
Target:  5'- gACGCCGgacaccUCGGGCAcCgGCGCGCc -3'
miRNA:   3'- gUGUGGCaac---AGCUCGUcGgUGUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.