miRNA display CGI


Results 21 - 40 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23328 3' -54.1 NC_005259.1 + 59422 0.72 0.502283
Target:  5'- uGGCGuCGGCGGCCAugaagaaCGGCGGUucguuacgGGGCg -3'
miRNA:   3'- -UCGU-GCUGUCGGUua-----GCCGCUA--------CUCG- -5'
23328 3' -54.1 NC_005259.1 + 58965 0.72 0.461691
Target:  5'- cAGCAggucgGGCAGCUcGUCGGCGAcggcGAGCu -3'
miRNA:   3'- -UCGUg----CUGUCGGuUAGCCGCUa---CUCG- -5'
23328 3' -54.1 NC_005259.1 + 58762 0.66 0.839946
Target:  5'- cGGCgaACGACGcugcgggcgcugugcGCCGGUCgaGGCGGUGAuuGCc -3'
miRNA:   3'- -UCG--UGCUGU---------------CGGUUAG--CCGCUACU--CG- -5'
23328 3' -54.1 NC_005259.1 + 58393 0.67 0.759855
Target:  5'- cGGUGCGcacCAGCCAccggCGGCGAUcagagauccaccGGGCa -3'
miRNA:   3'- -UCGUGCu--GUCGGUua--GCCGCUA------------CUCG- -5'
23328 3' -54.1 NC_005259.1 + 57866 0.67 0.779997
Target:  5'- cGGUGCGACAcCCucgaugUGGCGGUGcGCg -3'
miRNA:   3'- -UCGUGCUGUcGGuua---GCCGCUACuCG- -5'
23328 3' -54.1 NC_005259.1 + 57821 0.68 0.685868
Target:  5'- cGCACGcAUGGCCAgAUCGGCacgGAUGAc- -3'
miRNA:   3'- uCGUGC-UGUCGGU-UAGCCG---CUACUcg -5'
23328 3' -54.1 NC_005259.1 + 57525 0.68 0.685868
Target:  5'- cAGCGCuu--GCCGA-CGGCGAUG-GCg -3'
miRNA:   3'- -UCGUGcuguCGGUUaGCCGCUACuCG- -5'
23328 3' -54.1 NC_005259.1 + 57303 0.67 0.769997
Target:  5'- uGCACGACA-UCGAgcacCGGCGGUGucGGUg -3'
miRNA:   3'- uCGUGCUGUcGGUUa---GCCGCUAC--UCG- -5'
23328 3' -54.1 NC_005259.1 + 56362 0.66 0.809042
Target:  5'- gGGCACGcgguACAGCCGucgcgggccgcGUCGGCugaucgucucGAUGGuGCc -3'
miRNA:   3'- -UCGUGC----UGUCGGU-----------UAGCCG----------CUACU-CG- -5'
23328 3' -54.1 NC_005259.1 + 55367 0.69 0.638929
Target:  5'- gAGCgACGGCAGCCGugaucAgugcccacguuuccUCGGUGGUGAuGCc -3'
miRNA:   3'- -UCG-UGCUGUCGGU-----U--------------AGCCGCUACU-CG- -5'
23328 3' -54.1 NC_005259.1 + 54571 0.68 0.728698
Target:  5'- gAGCucaGugAGCUuGUC-GCGGUGGGCa -3'
miRNA:   3'- -UCGug-CugUCGGuUAGcCGCUACUCG- -5'
23328 3' -54.1 NC_005259.1 + 54505 0.68 0.718106
Target:  5'- gGGCAUGGCGGCgAuguggggUGGCGGgucGAGUa -3'
miRNA:   3'- -UCGUGCUGUCGgUua-----GCCGCUa--CUCG- -5'
23328 3' -54.1 NC_005259.1 + 54136 0.67 0.769997
Target:  5'- cGUGaccaGACGGUuuCGAggccCGGCGAUGGGCa -3'
miRNA:   3'- uCGUg---CUGUCG--GUUa---GCCGCUACUCG- -5'
23328 3' -54.1 NC_005259.1 + 52612 0.69 0.6466
Target:  5'- cGUACGGUGGCCAacuacgucgagcugcGUCGGCuguggggcgaGGUGAGCg -3'
miRNA:   3'- uCGUGCUGUCGGU---------------UAGCCG----------CUACUCG- -5'
23328 3' -54.1 NC_005259.1 + 50490 0.66 0.81837
Target:  5'- uGCuCGAUgAGCCGGUCgaugugGGCGGUGcGCu -3'
miRNA:   3'- uCGuGCUG-UCGGUUAG------CCGCUACuCG- -5'
23328 3' -54.1 NC_005259.1 + 50123 0.69 0.664102
Target:  5'- cGCACgGGCAccGCCAcacgcgauugGUUGGCGAuccggcgcgUGAGCg -3'
miRNA:   3'- uCGUG-CUGU--CGGU----------UAGCCGCU---------ACUCG- -5'
23328 3' -54.1 NC_005259.1 + 49635 0.82 0.126712
Target:  5'- --gGCGGCAGCCGcGUCGGCGAUG-GCg -3'
miRNA:   3'- ucgUGCUGUCGGU-UAGCCGCUACuCG- -5'
23328 3' -54.1 NC_005259.1 + 47707 0.69 0.642217
Target:  5'- uGCGCGGCAguGCCuuGUCGGCGAa---- -3'
miRNA:   3'- uCGUGCUGU--CGGu-UAGCCGCUacucg -5'
23328 3' -54.1 NC_005259.1 + 46514 0.68 0.718106
Target:  5'- cGUACGAUcccgcgAGCCGGUCGGgGAUcgccGAGa -3'
miRNA:   3'- uCGUGCUG------UCGGUUAGCCgCUA----CUCg -5'
23328 3' -54.1 NC_005259.1 + 46390 0.72 0.502283
Target:  5'- -uCACG-CAGCCGcgCGGUGA-GGGCa -3'
miRNA:   3'- ucGUGCuGUCGGUuaGCCGCUaCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.