miRNA display CGI


Results 1 - 20 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23328 5' -62.5 NC_005259.1 + 24816 0.66 0.375645
Target:  5'- -uGCCCcgGCacGCCGUgcccGCACCGaCCAa -3'
miRNA:   3'- auCGGGuaCG--CGGCGu---CGUGGC-GGUg -5'
23328 5' -62.5 NC_005259.1 + 34680 0.66 0.375645
Target:  5'- -uGCCCGcauugGCGCUGCGGaugauGCCGaCCAUc -3'
miRNA:   3'- auCGGGUa----CGCGGCGUCg----UGGC-GGUG- -5'
23328 5' -62.5 NC_005259.1 + 57002 0.66 0.375645
Target:  5'- -uGCCCGUGCGagcaCCuCAGCGCgGCUcgGCg -3'
miRNA:   3'- auCGGGUACGC----GGcGUCGUGgCGG--UG- -5'
23328 5' -62.5 NC_005259.1 + 42808 0.66 0.375645
Target:  5'- cGGCgCGUGCaCUGUGGUauugcuGCCGCCGCc -3'
miRNA:   3'- aUCGgGUACGcGGCGUCG------UGGCGGUG- -5'
23328 5' -62.5 NC_005259.1 + 3880 0.66 0.375645
Target:  5'- gAGCCCA--CcCCGCAGCGCgacaucguCGCCAUg -3'
miRNA:   3'- aUCGGGUacGcGGCGUCGUG--------GCGGUG- -5'
23328 5' -62.5 NC_005259.1 + 10874 0.66 0.375645
Target:  5'- cGGCCaa-GCGCaugaGCAGCACCcgGCCcCg -3'
miRNA:   3'- aUCGGguaCGCGg---CGUCGUGG--CGGuG- -5'
23328 5' -62.5 NC_005259.1 + 39882 0.66 0.375645
Target:  5'- -cGCCCAcaccgaaucguUGuCGCCGCcGC-CCGCCuCg -3'
miRNA:   3'- auCGGGU-----------AC-GCGGCGuCGuGGCGGuG- -5'
23328 5' -62.5 NC_005259.1 + 41688 0.66 0.36725
Target:  5'- gUGGCCaccGCGCacacagGCAuGCAgCCGCCGCa -3'
miRNA:   3'- -AUCGGguaCGCGg-----CGU-CGU-GGCGGUG- -5'
23328 5' -62.5 NC_005259.1 + 41472 0.66 0.36725
Target:  5'- cGGCCCGUGaCGCCGUcgAGCA-CGaCCuCg -3'
miRNA:   3'- aUCGGGUAC-GCGGCG--UCGUgGC-GGuG- -5'
23328 5' -62.5 NC_005259.1 + 4246 0.66 0.36725
Target:  5'- -cGCCCAcgugccucgacUGCgaggacaacggGCgGCuGCGCUGCCACg -3'
miRNA:   3'- auCGGGU-----------ACG-----------CGgCGuCGUGGCGGUG- -5'
23328 5' -62.5 NC_005259.1 + 9799 0.66 0.36725
Target:  5'- -uGCCCGcucGCGCCacuaccGCccGCACCGCCGg -3'
miRNA:   3'- auCGGGUa--CGCGG------CGu-CGUGGCGGUg -5'
23328 5' -62.5 NC_005259.1 + 56262 0.66 0.362276
Target:  5'- cGGCCUugaGCGCCGCcgcccggcccguaucGGCACCagcagaCCACg -3'
miRNA:   3'- aUCGGGua-CGCGGCG---------------UCGUGGc-----GGUG- -5'
23328 5' -62.5 NC_005259.1 + 54733 0.66 0.358986
Target:  5'- aUAGCCgAgGCuGCCGaCAGCgaucagGCCGCCGa -3'
miRNA:   3'- -AUCGGgUaCG-CGGC-GUCG------UGGCGGUg -5'
23328 5' -62.5 NC_005259.1 + 40074 0.66 0.358986
Target:  5'- --aCCCAUGgGCCGaCGcGCACCGagCGCg -3'
miRNA:   3'- aucGGGUACgCGGC-GU-CGUGGCg-GUG- -5'
23328 5' -62.5 NC_005259.1 + 35612 0.66 0.350852
Target:  5'- cUGGCCaCGcUGCGUCgaGUAGUucggGCCGCCGCc -3'
miRNA:   3'- -AUCGG-GU-ACGCGG--CGUCG----UGGCGGUG- -5'
23328 5' -62.5 NC_005259.1 + 39317 0.66 0.34285
Target:  5'- -cGCCCGcugucGCGCCGCuGGUgACCGUCAa -3'
miRNA:   3'- auCGGGUa----CGCGGCG-UCG-UGGCGGUg -5'
23328 5' -62.5 NC_005259.1 + 35858 0.66 0.34285
Target:  5'- aGGUCCGccgccGCGuccaCCGCAGcCGCCGCCGa -3'
miRNA:   3'- aUCGGGUa----CGC----GGCGUC-GUGGCGGUg -5'
23328 5' -62.5 NC_005259.1 + 56886 0.66 0.34285
Target:  5'- gAGCCgAc-CGCCaaucGCAGCgugGCCGCCGCa -3'
miRNA:   3'- aUCGGgUacGCGG----CGUCG---UGGCGGUG- -5'
23328 5' -62.5 NC_005259.1 + 27280 0.66 0.34285
Target:  5'- -cGCCUugaGcCGCCGCuGCACgCGCCGg -3'
miRNA:   3'- auCGGGua-C-GCGGCGuCGUG-GCGGUg -5'
23328 5' -62.5 NC_005259.1 + 23417 0.66 0.34285
Target:  5'- aAGaCUCAUgGCGgCGCaAGCAgcCCGCCACc -3'
miRNA:   3'- aUC-GGGUA-CGCgGCG-UCGU--GGCGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.