Results 1 - 20 of 152 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23331 | 5' | -59.9 | NC_005259.1 | + | 46552 | 0.66 | 0.596222 |
Target: 5'- uGGUcgCCGACCgCGCCuAUGgucgCGGCgucgACCg -3' miRNA: 3'- -CCG--GGCUGGaGCGGcUACa---GCCG----UGG- -5' |
|||||||
23331 | 5' | -59.9 | NC_005259.1 | + | 3833 | 0.66 | 0.595192 |
Target: 5'- gGGCCaCGAcgaugucCCUCGCaccguCGAcgccgGUCGaGCGCCu -3' miRNA: 3'- -CCGG-GCU-------GGAGCG-----GCUa----CAGC-CGUGG- -5' |
|||||||
23331 | 5' | -59.9 | NC_005259.1 | + | 31741 | 0.66 | 0.585933 |
Target: 5'- cGCCUG-CCgcgagCGCUGGUGUCccCACCg -3' miRNA: 3'- cCGGGCuGGa----GCGGCUACAGccGUGG- -5' |
|||||||
23331 | 5' | -59.9 | NC_005259.1 | + | 15355 | 0.66 | 0.585933 |
Target: 5'- uGGUCCaGuAUCUCGCCGAUcUgGGCgagcuGCCg -3' miRNA: 3'- -CCGGG-C-UGGAGCGGCUAcAgCCG-----UGG- -5' |
|||||||
23331 | 5' | -59.9 | NC_005259.1 | + | 52287 | 0.66 | 0.581827 |
Target: 5'- cGGCCCGAUgcgCGCCuaucucuaccUCGGUACCc -3' miRNA: 3'- -CCGGGCUGga-GCGGcuac------AGCCGUGG- -5' |
|||||||
23331 | 5' | -59.9 | NC_005259.1 | + | 46892 | 0.66 | 0.575679 |
Target: 5'- cGCCCGcgaugagcGCC-CGCCGAgcaGUCcgcguGCGCCg -3' miRNA: 3'- cCGGGC--------UGGaGCGGCUa--CAGc----CGUGG- -5' |
|||||||
23331 | 5' | -59.9 | NC_005259.1 | + | 45632 | 0.66 | 0.575679 |
Target: 5'- gGGCCgGGCagcgCGCCGGUGcCGccgugaaCACCg -3' miRNA: 3'- -CCGGgCUGga--GCGGCUACaGCc------GUGG- -5' |
|||||||
23331 | 5' | -59.9 | NC_005259.1 | + | 51544 | 0.66 | 0.575679 |
Target: 5'- gGGCCgGGCaagUGCaCGAcGUUGGgGCCa -3' miRNA: 3'- -CCGGgCUGga-GCG-GCUaCAGCCgUGG- -5' |
|||||||
23331 | 5' | -59.9 | NC_005259.1 | + | 2283 | 0.66 | 0.575679 |
Target: 5'- cGCCCGGCUaUC-CCGGUuucugauacaGUCGGCAUUc -3' miRNA: 3'- cCGGGCUGG-AGcGGCUA----------CAGCCGUGG- -5' |
|||||||
23331 | 5' | -59.9 | NC_005259.1 | + | 67105 | 0.66 | 0.574656 |
Target: 5'- uGGUCCGagguguacuGCC-CGCUGcgGUCGugcgugaGCACCg -3' miRNA: 3'- -CCGGGC---------UGGaGCGGCuaCAGC-------CGUGG- -5' |
|||||||
23331 | 5' | -59.9 | NC_005259.1 | + | 7411 | 0.66 | 0.565466 |
Target: 5'- cGGCau--CCUCGUCGccGUCGGCgguGCCc -3' miRNA: 3'- -CCGggcuGGAGCGGCuaCAGCCG---UGG- -5' |
|||||||
23331 | 5' | -59.9 | NC_005259.1 | + | 26641 | 0.66 | 0.565466 |
Target: 5'- uGGCCUGGCgUgCGCuCGGcagGuUCGGCGCa -3' miRNA: 3'- -CCGGGCUGgA-GCG-GCUa--C-AGCCGUGg -5' |
|||||||
23331 | 5' | -59.9 | NC_005259.1 | + | 59488 | 0.66 | 0.565466 |
Target: 5'- uGGCCCGAUa--GCCGAgagUGUCacCGCCc -3' miRNA: 3'- -CCGGGCUGgagCGGCU---ACAGccGUGG- -5' |
|||||||
23331 | 5' | -59.9 | NC_005259.1 | + | 44785 | 0.66 | 0.565466 |
Target: 5'- cGGUCgagaacaGACgCUCGCCGGUGgccUGGC-CCu -3' miRNA: 3'- -CCGGg------CUG-GAGCGGCUACa--GCCGuGG- -5' |
|||||||
23331 | 5' | -59.9 | NC_005259.1 | + | 48278 | 0.66 | 0.565466 |
Target: 5'- cGGUugUCGACCUUGCgGuUGUC-GUACCg -3' miRNA: 3'- -CCG--GGCUGGAGCGgCuACAGcCGUGG- -5' |
|||||||
23331 | 5' | -59.9 | NC_005259.1 | + | 66258 | 0.66 | 0.565466 |
Target: 5'- aGCgCGGCCcgCGCCGGgcggCGGCucacGCCg -3' miRNA: 3'- cCGgGCUGGa-GCGGCUaca-GCCG----UGG- -5' |
|||||||
23331 | 5' | -59.9 | NC_005259.1 | + | 45165 | 0.66 | 0.564447 |
Target: 5'- cGCCCuuGGCCUuguugcgCGCCGAgGUCaGCGCg -3' miRNA: 3'- cCGGG--CUGGA-------GCGGCUaCAGcCGUGg -5' |
|||||||
23331 | 5' | -59.9 | NC_005259.1 | + | 9088 | 0.66 | 0.5553 |
Target: 5'- aGGCCCGuuGCC-CGCCGAgggCGGggaACUc -3' miRNA: 3'- -CCGGGC--UGGaGCGGCUacaGCCg--UGG- -5' |
|||||||
23331 | 5' | -59.9 | NC_005259.1 | + | 37641 | 0.66 | 0.5553 |
Target: 5'- uGCCCGAugaCCgcaccgcCGCCGccGcCGGUGCCg -3' miRNA: 3'- cCGGGCU---GGa------GCGGCuaCaGCCGUGG- -5' |
|||||||
23331 | 5' | -59.9 | NC_005259.1 | + | 26135 | 0.66 | 0.5553 |
Target: 5'- cGGUCCGACgC-CGCCGAgGcCGaGCAgCCc -3' miRNA: 3'- -CCGGGCUG-GaGCGGCUaCaGC-CGU-GG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home