miRNA display CGI


Results 1 - 20 of 152 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23331 5' -59.9 NC_005259.1 + 46552 0.66 0.596222
Target:  5'- uGGUcgCCGACCgCGCCuAUGgucgCGGCgucgACCg -3'
miRNA:   3'- -CCG--GGCUGGaGCGGcUACa---GCCG----UGG- -5'
23331 5' -59.9 NC_005259.1 + 3833 0.66 0.595192
Target:  5'- gGGCCaCGAcgaugucCCUCGCaccguCGAcgccgGUCGaGCGCCu -3'
miRNA:   3'- -CCGG-GCU-------GGAGCG-----GCUa----CAGC-CGUGG- -5'
23331 5' -59.9 NC_005259.1 + 31741 0.66 0.585933
Target:  5'- cGCCUG-CCgcgagCGCUGGUGUCccCACCg -3'
miRNA:   3'- cCGGGCuGGa----GCGGCUACAGccGUGG- -5'
23331 5' -59.9 NC_005259.1 + 15355 0.66 0.585933
Target:  5'- uGGUCCaGuAUCUCGCCGAUcUgGGCgagcuGCCg -3'
miRNA:   3'- -CCGGG-C-UGGAGCGGCUAcAgCCG-----UGG- -5'
23331 5' -59.9 NC_005259.1 + 52287 0.66 0.581827
Target:  5'- cGGCCCGAUgcgCGCCuaucucuaccUCGGUACCc -3'
miRNA:   3'- -CCGGGCUGga-GCGGcuac------AGCCGUGG- -5'
23331 5' -59.9 NC_005259.1 + 2283 0.66 0.575679
Target:  5'- cGCCCGGCUaUC-CCGGUuucugauacaGUCGGCAUUc -3'
miRNA:   3'- cCGGGCUGG-AGcGGCUA----------CAGCCGUGG- -5'
23331 5' -59.9 NC_005259.1 + 51544 0.66 0.575679
Target:  5'- gGGCCgGGCaagUGCaCGAcGUUGGgGCCa -3'
miRNA:   3'- -CCGGgCUGga-GCG-GCUaCAGCCgUGG- -5'
23331 5' -59.9 NC_005259.1 + 46892 0.66 0.575679
Target:  5'- cGCCCGcgaugagcGCC-CGCCGAgcaGUCcgcguGCGCCg -3'
miRNA:   3'- cCGGGC--------UGGaGCGGCUa--CAGc----CGUGG- -5'
23331 5' -59.9 NC_005259.1 + 45632 0.66 0.575679
Target:  5'- gGGCCgGGCagcgCGCCGGUGcCGccgugaaCACCg -3'
miRNA:   3'- -CCGGgCUGga--GCGGCUACaGCc------GUGG- -5'
23331 5' -59.9 NC_005259.1 + 67105 0.66 0.574656
Target:  5'- uGGUCCGagguguacuGCC-CGCUGcgGUCGugcgugaGCACCg -3'
miRNA:   3'- -CCGGGC---------UGGaGCGGCuaCAGC-------CGUGG- -5'
23331 5' -59.9 NC_005259.1 + 26641 0.66 0.565466
Target:  5'- uGGCCUGGCgUgCGCuCGGcagGuUCGGCGCa -3'
miRNA:   3'- -CCGGGCUGgA-GCG-GCUa--C-AGCCGUGg -5'
23331 5' -59.9 NC_005259.1 + 59488 0.66 0.565466
Target:  5'- uGGCCCGAUa--GCCGAgagUGUCacCGCCc -3'
miRNA:   3'- -CCGGGCUGgagCGGCU---ACAGccGUGG- -5'
23331 5' -59.9 NC_005259.1 + 44785 0.66 0.565466
Target:  5'- cGGUCgagaacaGACgCUCGCCGGUGgccUGGC-CCu -3'
miRNA:   3'- -CCGGg------CUG-GAGCGGCUACa--GCCGuGG- -5'
23331 5' -59.9 NC_005259.1 + 48278 0.66 0.565466
Target:  5'- cGGUugUCGACCUUGCgGuUGUC-GUACCg -3'
miRNA:   3'- -CCG--GGCUGGAGCGgCuACAGcCGUGG- -5'
23331 5' -59.9 NC_005259.1 + 7411 0.66 0.565466
Target:  5'- cGGCau--CCUCGUCGccGUCGGCgguGCCc -3'
miRNA:   3'- -CCGggcuGGAGCGGCuaCAGCCG---UGG- -5'
23331 5' -59.9 NC_005259.1 + 66258 0.66 0.565466
Target:  5'- aGCgCGGCCcgCGCCGGgcggCGGCucacGCCg -3'
miRNA:   3'- cCGgGCUGGa-GCGGCUaca-GCCG----UGG- -5'
23331 5' -59.9 NC_005259.1 + 45165 0.66 0.564447
Target:  5'- cGCCCuuGGCCUuguugcgCGCCGAgGUCaGCGCg -3'
miRNA:   3'- cCGGG--CUGGA-------GCGGCUaCAGcCGUGg -5'
23331 5' -59.9 NC_005259.1 + 37641 0.66 0.5553
Target:  5'- uGCCCGAugaCCgcaccgcCGCCGccGcCGGUGCCg -3'
miRNA:   3'- cCGGGCU---GGa------GCGGCuaCaGCCGUGG- -5'
23331 5' -59.9 NC_005259.1 + 64752 0.66 0.5553
Target:  5'- cGCCCaccgcGCCUCGCgaCGGUGcgccUCGGCgGCCc -3'
miRNA:   3'- cCGGGc----UGGAGCG--GCUAC----AGCCG-UGG- -5'
23331 5' -59.9 NC_005259.1 + 26135 0.66 0.5553
Target:  5'- cGGUCCGACgC-CGCCGAgGcCGaGCAgCCc -3'
miRNA:   3'- -CCGGGCUG-GaGCGGCUaCaGC-CGU-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.