Results 1 - 20 of 102 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23335 | 5' | -57.3 | NC_005259.1 | + | 44103 | 0.66 | 0.688873 |
Target: 5'- aCGUCGacCAucUGCUCGCGCAUCGCCu -3' miRNA: 3'- -GCGGCccGUucACGGGUGUGUAGUGG- -5' |
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23335 | 5' | -57.3 | NC_005259.1 | + | 16333 | 0.66 | 0.688873 |
Target: 5'- uGCCcgauGCAcGGaUGCCCGCACAagACCg -3' miRNA: 3'- gCGGcc--CGU-UC-ACGGGUGUGUagUGG- -5' |
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23335 | 5' | -57.3 | NC_005259.1 | + | 7507 | 0.66 | 0.688873 |
Target: 5'- uGUCGGGCGGGaGaCCCGC-CAcCACa -3' miRNA: 3'- gCGGCCCGUUCaC-GGGUGuGUaGUGg -5' |
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23335 | 5' | -57.3 | NC_005259.1 | + | 29902 | 0.66 | 0.678298 |
Target: 5'- aGCacaaGGGguGGcUGCCCgagaccaucgACGCGUgGCCg -3' miRNA: 3'- gCGg---CCCguUC-ACGGG----------UGUGUAgUGG- -5' |
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23335 | 5' | -57.3 | NC_005259.1 | + | 19535 | 0.66 | 0.678298 |
Target: 5'- cCGCCGuGCAGGccgacgcguaUGCCCGCAgcCGUCgggacagcGCCg -3' miRNA: 3'- -GCGGCcCGUUC----------ACGGGUGU--GUAG--------UGG- -5' |
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23335 | 5' | -57.3 | NC_005259.1 | + | 28389 | 0.66 | 0.678298 |
Target: 5'- -aCCGGacgacaguguGUAGGUGCCCGCGCG-CAUg -3' miRNA: 3'- gcGGCC----------CGUUCACGGGUGUGUaGUGg -5' |
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23335 | 5' | -57.3 | NC_005259.1 | + | 26914 | 0.66 | 0.678298 |
Target: 5'- gGCCGGGUuucuUGCCCucguggaucucgGCAUA-CGCCg -3' miRNA: 3'- gCGGCCCGuuc-ACGGG------------UGUGUaGUGG- -5' |
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23335 | 5' | -57.3 | NC_005259.1 | + | 20527 | 0.66 | 0.678298 |
Target: 5'- aGCaCGGGUgcGcUGCCCGCAgCGUgguggaucagCACCg -3' miRNA: 3'- gCG-GCCCGuuC-ACGGGUGU-GUA----------GUGG- -5' |
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23335 | 5' | -57.3 | NC_005259.1 | + | 50370 | 0.66 | 0.667681 |
Target: 5'- uGCUcGGCGAGaaacucgGCCCACGUGUCGCg -3' miRNA: 3'- gCGGcCCGUUCa------CGGGUGUGUAGUGg -5' |
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23335 | 5' | -57.3 | NC_005259.1 | + | 49108 | 0.66 | 0.667681 |
Target: 5'- cCGCCGGGaucuCAAGa---CGCugAUCACCg -3' miRNA: 3'- -GCGGCCC----GUUCacggGUGugUAGUGG- -5' |
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23335 | 5' | -57.3 | NC_005259.1 | + | 34066 | 0.66 | 0.667681 |
Target: 5'- cCGaCCacGGCGgcGGUGUCCACACGUagGCCc -3' miRNA: 3'- -GC-GGc-CCGU--UCACGGGUGUGUAg-UGG- -5' |
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23335 | 5' | -57.3 | NC_005259.1 | + | 3862 | 0.66 | 0.658099 |
Target: 5'- aCGCCGGuCGAGcgccucgaGCCCACcccgcagcgcgacauCGUCGCCa -3' miRNA: 3'- -GCGGCCcGUUCa-------CGGGUGu--------------GUAGUGG- -5' |
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23335 | 5' | -57.3 | NC_005259.1 | + | 23473 | 0.66 | 0.657033 |
Target: 5'- gGCCucGGCAuugucGGUGCCgACGcCAUgACCa -3' miRNA: 3'- gCGGc-CCGU-----UCACGGgUGU-GUAgUGG- -5' |
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23335 | 5' | -57.3 | NC_005259.1 | + | 23425 | 0.66 | 0.657033 |
Target: 5'- uGgCGGcGCAAGcaGCCCGC-CAcCGCCa -3' miRNA: 3'- gCgGCC-CGUUCa-CGGGUGuGUaGUGG- -5' |
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23335 | 5' | -57.3 | NC_005259.1 | + | 31528 | 0.66 | 0.657033 |
Target: 5'- -aUCGGGguGGUGCCgugAUAgAUCGCCu -3' miRNA: 3'- gcGGCCCguUCACGGg--UGUgUAGUGG- -5' |
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23335 | 5' | -57.3 | NC_005259.1 | + | 4510 | 0.66 | 0.657033 |
Target: 5'- gCGCCGGG--AGUgGCgCUGCGCggCACCc -3' miRNA: 3'- -GCGGCCCguUCA-CG-GGUGUGuaGUGG- -5' |
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23335 | 5' | -57.3 | NC_005259.1 | + | 58724 | 0.66 | 0.657033 |
Target: 5'- uCGCCGGG--GGUGUCgUugGCAccggCACCg -3' miRNA: 3'- -GCGGCCCguUCACGG-GugUGUa---GUGG- -5' |
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23335 | 5' | -57.3 | NC_005259.1 | + | 24816 | 0.66 | 0.657033 |
Target: 5'- uGCCccGGCAcgccGUGCCCGCACcg-ACCa -3' miRNA: 3'- gCGGc-CCGUu---CACGGGUGUGuagUGG- -5' |
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23335 | 5' | -57.3 | NC_005259.1 | + | 8290 | 0.66 | 0.646364 |
Target: 5'- uGCgCGGGCA----CCCGCACGgaaaCGCCg -3' miRNA: 3'- gCG-GCCCGUucacGGGUGUGUa---GUGG- -5' |
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23335 | 5' | -57.3 | NC_005259.1 | + | 750 | 0.66 | 0.646364 |
Target: 5'- aCGCC--GCcGGUGCCUAcCGCGUcCACCg -3' miRNA: 3'- -GCGGccCGuUCACGGGU-GUGUA-GUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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