miRNA display CGI


Results 21 - 40 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23335 5' -57.3 NC_005259.1 + 59476 0.71 0.403211
Target:  5'- uGuuGGGCAGGaugGCCCGauaGCcgagaguGUCACCg -3'
miRNA:   3'- gCggCCCGUUCa--CGGGUg--UG-------UAGUGG- -5'
23335 5' -57.3 NC_005259.1 + 25237 0.71 0.38644
Target:  5'- -cUCGGGCAguuGGUGCUCAUGCAcccCACCg -3'
miRNA:   3'- gcGGCCCGU---UCACGGGUGUGUa--GUGG- -5'
23335 5' -57.3 NC_005259.1 + 22638 0.71 0.376942
Target:  5'- uCGCCGcGUcGGUcgacgccGCCCAcCACAUCGCCg -3'
miRNA:   3'- -GCGGCcCGuUCA-------CGGGU-GUGUAGUGG- -5'
23335 5' -57.3 NC_005259.1 + 68703 0.71 0.368446
Target:  5'- aGgCGGGCAgcgcgucGGUGCCCGagaACugggGUCGCCg -3'
miRNA:   3'- gCgGCCCGU-------UCACGGGUg--UG----UAGUGG- -5'
23335 5' -57.3 NC_005259.1 + 52270 0.71 0.360913
Target:  5'- gGCCGGGCAgacAGgaccgGCCCgAUGCG-CGCCu -3'
miRNA:   3'- gCGGCCCGU---UCa----CGGG-UGUGUaGUGG- -5'
23335 5' -57.3 NC_005259.1 + 44397 0.71 0.360082
Target:  5'- uCGCCGaGCAcgucGGUGCCCGCcugaccgGCAgCGCCg -3'
miRNA:   3'- -GCGGCcCGU----UCACGGGUG-------UGUaGUGG- -5'
23335 5' -57.3 NC_005259.1 + 45633 0.7 0.439983
Target:  5'- gGCCGGGCAgcgcgccGGUGCCgccgugaACAC--CGCCg -3'
miRNA:   3'- gCGGCCCGU-------UCACGGg------UGUGuaGUGG- -5'
23335 5' -57.3 NC_005259.1 + 45971 0.7 0.431542
Target:  5'- uGCCGagcuuGGCGAGUGUguCCGCguACAUCugCg -3'
miRNA:   3'- gCGGC-----CCGUUCACG--GGUG--UGUAGugG- -5'
23335 5' -57.3 NC_005259.1 + 8820 0.7 0.431542
Target:  5'- gCGCCGGGCcGGUGaguugaCGCGCugCGCCg -3'
miRNA:   3'- -GCGGCCCGuUCACgg----GUGUGuaGUGG- -5'
23335 5' -57.3 NC_005259.1 + 44983 0.7 0.413129
Target:  5'- gGCCGGuGCGAcUGCCgAgGCAcCGCCg -3'
miRNA:   3'- gCGGCC-CGUUcACGGgUgUGUaGUGG- -5'
23335 5' -57.3 NC_005259.1 + 68524 0.69 0.479577
Target:  5'- uGCCGaGCGAGcUGCCCGCcacGCGUCGa- -3'
miRNA:   3'- gCGGCcCGUUC-ACGGGUG---UGUAGUgg -5'
23335 5' -57.3 NC_005259.1 + 12234 0.69 0.479577
Target:  5'- gGCCGGGCAA-UGgUCACAC--CGCCu -3'
miRNA:   3'- gCGGCCCGUUcACgGGUGUGuaGUGG- -5'
23335 5' -57.3 NC_005259.1 + 6226 0.69 0.476619
Target:  5'- gCGCCgacaccgugaccguGGGCGAGUGggucgauauCCCGCACcgcCGCCg -3'
miRNA:   3'- -GCGG--------------CCCGUUCAC---------GGGUGUGua-GUGG- -5'
23335 5' -57.3 NC_005259.1 + 27407 0.69 0.473671
Target:  5'- aGCgGcGGCAgcucGGUGCCCGCgaggaauuggcucacGCGUCGCa -3'
miRNA:   3'- gCGgC-CCGU----UCACGGGUG---------------UGUAGUGg -5'
23335 5' -57.3 NC_005259.1 + 37359 0.69 0.469755
Target:  5'- cCGCUGuGCGAGUaGCUCACGCccucggCACCg -3'
miRNA:   3'- -GCGGCcCGUUCA-CGGGUGUGua----GUGG- -5'
23335 5' -57.3 NC_005259.1 + 57703 0.69 0.469755
Target:  5'- uGCCGGGCu--UGCCCGacuCGCgggucugccaGUCACCc -3'
miRNA:   3'- gCGGCCCGuucACGGGU---GUG----------UAGUGG- -5'
23335 5' -57.3 NC_005259.1 + 49442 0.69 0.469755
Target:  5'- gCGCCGccuuggucGGCAgccGGaUGCCCAgCAgGUCGCCc -3'
miRNA:   3'- -GCGGC--------CCGU---UC-ACGGGU-GUgUAGUGG- -5'
23335 5' -57.3 NC_005259.1 + 20137 0.69 0.469755
Target:  5'- uGCCGucgcgaugacGGCAgccGGUGCCCugGC--CACCg -3'
miRNA:   3'- gCGGC----------CCGU---UCACGGGugUGuaGUGG- -5'
23335 5' -57.3 NC_005259.1 + 27364 0.69 0.460036
Target:  5'- -aUCGGGCuuGGUGCCCGgCACgGUgACCg -3'
miRNA:   3'- gcGGCCCGu-UCACGGGU-GUG-UAgUGG- -5'
23335 5' -57.3 NC_005259.1 + 19874 0.69 0.479577
Target:  5'- cCGCCGGGauc--GCCgACGCcgCGCCc -3'
miRNA:   3'- -GCGGCCCguucaCGGgUGUGuaGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.