miRNA display CGI


Results 21 - 40 of 102 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23335 5' -57.3 NC_005259.1 + 44397 0.71 0.360082
Target:  5'- uCGCCGaGCAcgucGGUGCCCGCcugaccgGCAgCGCCg -3'
miRNA:   3'- -GCGGCcCGU----UCACGGGUG-------UGUaGUGG- -5'
23335 5' -57.3 NC_005259.1 + 52270 0.71 0.360913
Target:  5'- gGCCGGGCAgacAGgaccgGCCCgAUGCG-CGCCu -3'
miRNA:   3'- gCGGCCCGU---UCa----CGGG-UGUGUaGUGG- -5'
23335 5' -57.3 NC_005259.1 + 68703 0.71 0.368446
Target:  5'- aGgCGGGCAgcgcgucGGUGCCCGagaACugggGUCGCCg -3'
miRNA:   3'- gCgGCCCGU-------UCACGGGUg--UG----UAGUGG- -5'
23335 5' -57.3 NC_005259.1 + 22638 0.71 0.376942
Target:  5'- uCGCCGcGUcGGUcgacgccGCCCAcCACAUCGCCg -3'
miRNA:   3'- -GCGGCcCGuUCA-------CGGGU-GUGUAGUGG- -5'
23335 5' -57.3 NC_005259.1 + 25237 0.71 0.38644
Target:  5'- -cUCGGGCAguuGGUGCUCAUGCAcccCACCg -3'
miRNA:   3'- gcGGCCCGU---UCACGGGUGUGUa--GUGG- -5'
23335 5' -57.3 NC_005259.1 + 59476 0.71 0.403211
Target:  5'- uGuuGGGCAGGaugGCCCGauaGCcgagaguGUCACCg -3'
miRNA:   3'- gCggCCCGUUCa--CGGGUg--UG-------UAGUGG- -5'
23335 5' -57.3 NC_005259.1 + 45971 0.7 0.431542
Target:  5'- uGCCGagcuuGGCGAGUGUguCCGCguACAUCugCg -3'
miRNA:   3'- gCGGC-----CCGUUCACG--GGUG--UGUAGugG- -5'
23335 5' -57.3 NC_005259.1 + 45633 0.7 0.439983
Target:  5'- gGCCGGGCAgcgcgccGGUGCCgccgugaACAC--CGCCg -3'
miRNA:   3'- gCGGCCCGU-------UCACGGg------UGUGuaGUGG- -5'
23335 5' -57.3 NC_005259.1 + 8820 0.7 0.431542
Target:  5'- gCGCCGGGCcGGUGaguugaCGCGCugCGCCg -3'
miRNA:   3'- -GCGGCCCGuUCACgg----GUGUGuaGUGG- -5'
23335 5' -57.3 NC_005259.1 + 44983 0.7 0.413129
Target:  5'- gGCCGGuGCGAcUGCCgAgGCAcCGCCg -3'
miRNA:   3'- gCGGCC-CGUUcACGGgUgUGUaGUGG- -5'
23335 5' -57.3 NC_005259.1 + 31000 0.69 0.489498
Target:  5'- cCGCCgugGGGCcGGaacUGUCCACACGUgAUCg -3'
miRNA:   3'- -GCGG---CCCGuUC---ACGGGUGUGUAgUGG- -5'
23335 5' -57.3 NC_005259.1 + 37017 0.69 0.509621
Target:  5'- cCGCCGGGgaacaugaCAaugucgaucuuGGUGCCCGC-CAcCGCCc -3'
miRNA:   3'- -GCGGCCC--------GU-----------UCACGGGUGuGUaGUGG- -5'
23335 5' -57.3 NC_005259.1 + 17771 0.69 0.509621
Target:  5'- gCGCCGGGcCGAGcGCaCCGaGCGUgcgCACCg -3'
miRNA:   3'- -GCGGCCC-GUUCaCG-GGUgUGUA---GUGG- -5'
23335 5' -57.3 NC_005259.1 + 12559 0.69 0.508606
Target:  5'- uGCCGGGguGGcccgccagauccaUGCcgccCCACGCGUCgACCc -3'
miRNA:   3'- gCGGCCCguUC-------------ACG----GGUGUGUAG-UGG- -5'
23335 5' -57.3 NC_005259.1 + 4995 0.69 0.498509
Target:  5'- gGCCGGGCAcuacggcaagguGGUcgagaucgauccgGcCCCACACGacagCGCCa -3'
miRNA:   3'- gCGGCCCGU------------UCA-------------C-GGGUGUGUa---GUGG- -5'
23335 5' -57.3 NC_005259.1 + 47888 0.69 0.493494
Target:  5'- gGCCGGGUcagcgucggcucguuGAGcGCCUugAuggCGUCGCCg -3'
miRNA:   3'- gCGGCCCG---------------UUCaCGGGugU---GUAGUGG- -5'
23335 5' -57.3 NC_005259.1 + 52207 0.69 0.489498
Target:  5'- gGCUcauGGGCAccgcGUuccgcGCCCGCugAUCACCc -3'
miRNA:   3'- gCGG---CCCGUu---CA-----CGGGUGugUAGUGG- -5'
23335 5' -57.3 NC_005259.1 + 7178 0.69 0.489498
Target:  5'- gGCaccGGCGAGUGCCCGgccUGCGgacgCACCg -3'
miRNA:   3'- gCGgc-CCGUUCACGGGU---GUGUa---GUGG- -5'
23335 5' -57.3 NC_005259.1 + 19874 0.69 0.479577
Target:  5'- cCGCCGGGauc--GCCgACGCcgCGCCc -3'
miRNA:   3'- -GCGGCCCguucaCGGgUGUGuaGUGG- -5'
23335 5' -57.3 NC_005259.1 + 20137 0.69 0.469755
Target:  5'- uGCCGucgcgaugacGGCAgccGGUGCCCugGC--CACCg -3'
miRNA:   3'- gCGGC----------CCGU---UCACGGGugUGuaGUGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.