miRNA display CGI


Results 21 - 40 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23337 3' -52.4 NC_005259.1 + 51569 0.66 0.888354
Target:  5'- gGCCAacgauccGGCAGCCGGUGCCGAcacaGCcGCa -3'
miRNA:   3'- gCGGU-------UCGUUGGCUGUGGCU----UGaUGc -5'
23337 3' -52.4 NC_005259.1 + 50992 0.66 0.903123
Target:  5'- uGUCGAGUcACCGGCgaaaaACCGGACgUugGu -3'
miRNA:   3'- gCGGUUCGuUGGCUG-----UGGCUUG-AugC- -5'
23337 3' -52.4 NC_005259.1 + 50404 0.71 0.679083
Target:  5'- uCGCCGAGCGcgccggugccuugACCGGC-UCGGGCaGCGg -3'
miRNA:   3'- -GCGGUUCGU-------------UGGCUGuGGCUUGaUGC- -5'
23337 3' -52.4 NC_005259.1 + 50133 0.67 0.857094
Target:  5'- cCGCCAcacgcgauugguuGGCGAuCCGGCGCgUGAGCgaGCGg -3'
miRNA:   3'- -GCGGU-------------UCGUU-GGCUGUG-GCUUGa-UGC- -5'
23337 3' -52.4 NC_005259.1 + 48442 0.66 0.905803
Target:  5'- gCGCgAGGCAgcggcagcgcguuccACCGcGCGCCGggUcGCGu -3'
miRNA:   3'- -GCGgUUCGU---------------UGGC-UGUGGCuuGaUGC- -5'
23337 3' -52.4 NC_005259.1 + 47988 0.68 0.803366
Target:  5'- uGCCGGGCAgcgcaagACCGGCuugugUGAGCUGCu -3'
miRNA:   3'- gCGGUUCGU-------UGGCUGug---GCUUGAUGc -5'
23337 3' -52.4 NC_005259.1 + 47282 0.74 0.50685
Target:  5'- -aCCGAGCAgaccGCCGuCGCCGGACaGCGa -3'
miRNA:   3'- gcGGUUCGU----UGGCuGUGGCUUGaUGC- -5'
23337 3' -52.4 NC_005259.1 + 46908 0.73 0.538466
Target:  5'- cCGCCGAGCAGuCCGcgugcgcCGCCGAGCUuGCc -3'
miRNA:   3'- -GCGGUUCGUU-GGCu------GUGGCUUGA-UGc -5'
23337 3' -52.4 NC_005259.1 + 46771 0.74 0.50062
Target:  5'- gCGCCGA-CAGCCGcgcccgccgggccgaACACCGAGcCUGCGa -3'
miRNA:   3'- -GCGGUUcGUUGGC---------------UGUGGCUU-GAUGC- -5'
23337 3' -52.4 NC_005259.1 + 45950 0.67 0.849527
Target:  5'- -cCCucAGCAcguuGCCGACguuGCCGAGCUugGc -3'
miRNA:   3'- gcGGu-UCGU----UGGCUG---UGGCUUGAugC- -5'
23337 3' -52.4 NC_005259.1 + 45404 0.69 0.784909
Target:  5'- cCGCCGAGCGcGCUGAuggcCGCCGccGCUGCc -3'
miRNA:   3'- -GCGGUUCGU-UGGCU----GUGGCu-UGAUGc -5'
23337 3' -52.4 NC_005259.1 + 45314 0.83 0.163873
Target:  5'- aCGCCGAG--GCCGcCGCCGAACUGCGu -3'
miRNA:   3'- -GCGGUUCguUGGCuGUGGCUUGAUGC- -5'
23337 3' -52.4 NC_005259.1 + 44995 0.67 0.849527
Target:  5'- uGCCgAGGCAccGCCGAcCGCCgGGGCcGCGc -3'
miRNA:   3'- gCGG-UUCGU--UGGCU-GUGG-CUUGaUGC- -5'
23337 3' -52.4 NC_005259.1 + 44532 0.66 0.903123
Target:  5'- cCGCCcGGCAguccacucauGCCGAgACCGGcagGCaGCGc -3'
miRNA:   3'- -GCGGuUCGU----------UGGCUgUGGCU---UGaUGC- -5'
23337 3' -52.4 NC_005259.1 + 44161 0.66 0.916088
Target:  5'- gGUCGAGCAGC--GCGCCGGugU-CGg -3'
miRNA:   3'- gCGGUUCGUUGgcUGUGGCUugAuGC- -5'
23337 3' -52.4 NC_005259.1 + 43906 0.74 0.486218
Target:  5'- gCGCCGgcugaucgaugGGCAGCgaCGACACCGcGCUACu -3'
miRNA:   3'- -GCGGU-----------UCGUUG--GCUGUGGCuUGAUGc -5'
23337 3' -52.4 NC_005259.1 + 43856 0.68 0.832063
Target:  5'- uGCCGAGCGcACCcgugacGACACCG-GCaGCGu -3'
miRNA:   3'- gCGGUUCGU-UGG------CUGUGGCuUGaUGC- -5'
23337 3' -52.4 NC_005259.1 + 43783 0.7 0.691036
Target:  5'- uCGCCGGGCAugagcagcGCgGGCACCGAGuccUUGCc -3'
miRNA:   3'- -GCGGUUCGU--------UGgCUGUGGCUU---GAUGc -5'
23337 3' -52.4 NC_005259.1 + 43737 0.66 0.896236
Target:  5'- gGCCAuGCcGCCGA-GCCGGGCaACa -3'
miRNA:   3'- gCGGUuCGuUGGCUgUGGCUUGaUGc -5'
23337 3' -52.4 NC_005259.1 + 43468 0.71 0.63637
Target:  5'- uCGUUGAGCAACCGGCcCUGAGCgucgaACGc -3'
miRNA:   3'- -GCGGUUCGUUGGCUGuGGCUUGa----UGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.