Results 1 - 20 of 60 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23337 | 5' | -65.6 | NC_005259.1 | + | 766 | 0.66 | 0.333378 |
Target: 5'- cCGCGUccaccGCgCCGAGG-CG-GCUGCCCu- -3' miRNA: 3'- -GCGCG-----CG-GGCUCCaGCuCGGCGGGca -5' |
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23337 | 5' | -65.6 | NC_005259.1 | + | 8645 | 0.66 | 0.333378 |
Target: 5'- gGCGgGCaCGAggcuguGGUCGGGCUGCCaCGc -3' miRNA: 3'- gCGCgCGgGCU------CCAGCUCGGCGG-GCa -5' |
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23337 | 5' | -65.6 | NC_005259.1 | + | 28749 | 0.66 | 0.326043 |
Target: 5'- -aCGCGCCCGAGcGUgaGAucGUCGCCgGUg -3' miRNA: 3'- gcGCGCGGGCUC-CAg-CU--CGGCGGgCA- -5' |
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23337 | 5' | -65.6 | NC_005259.1 | + | 6662 | 0.66 | 0.326043 |
Target: 5'- aGgGUGUCCGuGacgcgCGAGCUGCCCGc -3' miRNA: 3'- gCgCGCGGGCuCca---GCUCGGCGGGCa -5' |
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23337 | 5' | -65.6 | NC_005259.1 | + | 9400 | 0.66 | 0.326043 |
Target: 5'- aCGCGCGCCCc-GGUaCGGGUgCGCCa-- -3' miRNA: 3'- -GCGCGCGGGcuCCA-GCUCG-GCGGgca -5' |
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23337 | 5' | -65.6 | NC_005259.1 | + | 30830 | 0.66 | 0.326043 |
Target: 5'- gGCGCG-CCGAGGUCG-GCaaCCUGc -3' miRNA: 3'- gCGCGCgGGCUCCAGCuCGgcGGGCa -5' |
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23337 | 5' | -65.6 | NC_005259.1 | + | 37009 | 0.66 | 0.325316 |
Target: 5'- cCGCGCGCCCGccGGGgaacaugacaaugUCGAucuuGgUGCCCGc -3' miRNA: 3'- -GCGCGCGGGC--UCC-------------AGCU----CgGCGGGCa -5' |
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23337 | 5' | -65.6 | NC_005259.1 | + | 37179 | 0.66 | 0.318828 |
Target: 5'- aCGC-CGCgCGAGGaCGAGCUgcgGCCCu- -3' miRNA: 3'- -GCGcGCGgGCUCCaGCUCGG---CGGGca -5' |
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23337 | 5' | -65.6 | NC_005259.1 | + | 55764 | 0.66 | 0.318828 |
Target: 5'- uGCGCaGCCgCGuacGcGUCGAGCUcgGCCCGc -3' miRNA: 3'- gCGCG-CGG-GCu--C-CAGCUCGG--CGGGCa -5' |
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23337 | 5' | -65.6 | NC_005259.1 | + | 29875 | 0.66 | 0.314557 |
Target: 5'- uGCcacCGCCCGAugucgaGGUCGgcaagcacaagggguGGCUGCCCGa -3' miRNA: 3'- gCGc--GCGGGCU------CCAGC---------------UCGGCGGGCa -5' |
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23337 | 5' | -65.6 | NC_005259.1 | + | 19255 | 0.66 | 0.311734 |
Target: 5'- gGC-CGCCUGc---CGGGCCGCCCGa -3' miRNA: 3'- gCGcGCGGGCuccaGCUCGGCGGGCa -5' |
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23337 | 5' | -65.6 | NC_005259.1 | + | 35692 | 0.66 | 0.311031 |
Target: 5'- aCGcCGUGCCCGgcgagGGGUCGcugacgaGGuauCCGCCCGa -3' miRNA: 3'- -GC-GCGCGGGC-----UCCAGC-------UC---GGCGGGCa -5' |
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23337 | 5' | -65.6 | NC_005259.1 | + | 40559 | 0.66 | 0.30476 |
Target: 5'- aCGCGCGCCCGcgcGGuGUUGcugucGGCgGCUCGc -3' miRNA: 3'- -GCGCGCGGGC---UC-CAGC-----UCGgCGGGCa -5' |
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23337 | 5' | -65.6 | NC_005259.1 | + | 43264 | 0.66 | 0.30476 |
Target: 5'- cCGgGUGCCUGAGaGUUGAccGCagCGCCCGc -3' miRNA: 3'- -GCgCGCGGGCUC-CAGCU--CG--GCGGGCa -5' |
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23337 | 5' | -65.6 | NC_005259.1 | + | 52039 | 0.66 | 0.30476 |
Target: 5'- uGCGCGCUgucgccguCGAGGaucgCGAcGCCGUCCu- -3' miRNA: 3'- gCGCGCGG--------GCUCCa---GCU-CGGCGGGca -5' |
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23337 | 5' | -65.6 | NC_005259.1 | + | 66813 | 0.66 | 0.304069 |
Target: 5'- uGCGUGCCCugccGGucUCGAaacucuggcucauGCCGCCCGc -3' miRNA: 3'- gCGCGCGGGcu--CC--AGCU-------------CGGCGGGCa -5' |
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23337 | 5' | -65.6 | NC_005259.1 | + | 20698 | 0.66 | 0.297907 |
Target: 5'- -aCGCGCUCGGuGGUCGAagguuucaccccGCCGCgCGa -3' miRNA: 3'- gcGCGCGGGCU-CCAGCU------------CGGCGgGCa -5' |
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23337 | 5' | -65.6 | NC_005259.1 | + | 55615 | 0.66 | 0.291173 |
Target: 5'- uCGCGCGCCUuggccGGGaUCaGGGCCuguagacgaGCCCGUg -3' miRNA: 3'- -GCGCGCGGGc----UCC-AG-CUCGG---------CGGGCA- -5' |
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23337 | 5' | -65.6 | NC_005259.1 | + | 32782 | 0.67 | 0.287191 |
Target: 5'- uGCGUggcacccgagucguaGCCCGAGGUCGAucccgacgcaccGCCGUCg-- -3' miRNA: 3'- gCGCG---------------CGGGCUCCAGCU------------CGGCGGgca -5' |
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23337 | 5' | -65.6 | NC_005259.1 | + | 26344 | 0.67 | 0.28456 |
Target: 5'- aGCaCGCCCucGGGcCGAGCUGCgCGUa -3' miRNA: 3'- gCGcGCGGGc-UCCaGCUCGGCGgGCA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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