miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23337 5' -65.6 NC_005259.1 + 8645 0.66 0.333378
Target:  5'- gGCGgGCaCGAggcuguGGUCGGGCUGCCaCGc -3'
miRNA:   3'- gCGCgCGgGCU------CCAGCUCGGCGG-GCa -5'
23337 5' -65.6 NC_005259.1 + 766 0.66 0.333378
Target:  5'- cCGCGUccaccGCgCCGAGG-CG-GCUGCCCu- -3'
miRNA:   3'- -GCGCG-----CG-GGCUCCaGCuCGGCGGGca -5'
23337 5' -65.6 NC_005259.1 + 30830 0.66 0.326043
Target:  5'- gGCGCG-CCGAGGUCG-GCaaCCUGc -3'
miRNA:   3'- gCGCGCgGGCUCCAGCuCGgcGGGCa -5'
23337 5' -65.6 NC_005259.1 + 9400 0.66 0.326043
Target:  5'- aCGCGCGCCCc-GGUaCGGGUgCGCCa-- -3'
miRNA:   3'- -GCGCGCGGGcuCCA-GCUCG-GCGGgca -5'
23337 5' -65.6 NC_005259.1 + 6662 0.66 0.326043
Target:  5'- aGgGUGUCCGuGacgcgCGAGCUGCCCGc -3'
miRNA:   3'- gCgCGCGGGCuCca---GCUCGGCGGGCa -5'
23337 5' -65.6 NC_005259.1 + 28749 0.66 0.326043
Target:  5'- -aCGCGCCCGAGcGUgaGAucGUCGCCgGUg -3'
miRNA:   3'- gcGCGCGGGCUC-CAg-CU--CGGCGGgCA- -5'
23337 5' -65.6 NC_005259.1 + 37009 0.66 0.325316
Target:  5'- cCGCGCGCCCGccGGGgaacaugacaaugUCGAucuuGgUGCCCGc -3'
miRNA:   3'- -GCGCGCGGGC--UCC-------------AGCU----CgGCGGGCa -5'
23337 5' -65.6 NC_005259.1 + 37179 0.66 0.318828
Target:  5'- aCGC-CGCgCGAGGaCGAGCUgcgGCCCu- -3'
miRNA:   3'- -GCGcGCGgGCUCCaGCUCGG---CGGGca -5'
23337 5' -65.6 NC_005259.1 + 55764 0.66 0.318828
Target:  5'- uGCGCaGCCgCGuacGcGUCGAGCUcgGCCCGc -3'
miRNA:   3'- gCGCG-CGG-GCu--C-CAGCUCGG--CGGGCa -5'
23337 5' -65.6 NC_005259.1 + 29875 0.66 0.314557
Target:  5'- uGCcacCGCCCGAugucgaGGUCGgcaagcacaagggguGGCUGCCCGa -3'
miRNA:   3'- gCGc--GCGGGCU------CCAGC---------------UCGGCGGGCa -5'
23337 5' -65.6 NC_005259.1 + 19255 0.66 0.311734
Target:  5'- gGC-CGCCUGc---CGGGCCGCCCGa -3'
miRNA:   3'- gCGcGCGGGCuccaGCUCGGCGGGCa -5'
23337 5' -65.6 NC_005259.1 + 35692 0.66 0.311031
Target:  5'- aCGcCGUGCCCGgcgagGGGUCGcugacgaGGuauCCGCCCGa -3'
miRNA:   3'- -GC-GCGCGGGC-----UCCAGC-------UC---GGCGGGCa -5'
23337 5' -65.6 NC_005259.1 + 52039 0.66 0.30476
Target:  5'- uGCGCGCUgucgccguCGAGGaucgCGAcGCCGUCCu- -3'
miRNA:   3'- gCGCGCGG--------GCUCCa---GCU-CGGCGGGca -5'
23337 5' -65.6 NC_005259.1 + 43264 0.66 0.30476
Target:  5'- cCGgGUGCCUGAGaGUUGAccGCagCGCCCGc -3'
miRNA:   3'- -GCgCGCGGGCUC-CAGCU--CG--GCGGGCa -5'
23337 5' -65.6 NC_005259.1 + 40559 0.66 0.30476
Target:  5'- aCGCGCGCCCGcgcGGuGUUGcugucGGCgGCUCGc -3'
miRNA:   3'- -GCGCGCGGGC---UC-CAGC-----UCGgCGGGCa -5'
23337 5' -65.6 NC_005259.1 + 66813 0.66 0.304069
Target:  5'- uGCGUGCCCugccGGucUCGAaacucuggcucauGCCGCCCGc -3'
miRNA:   3'- gCGCGCGGGcu--CC--AGCU-------------CGGCGGGCa -5'
23337 5' -65.6 NC_005259.1 + 20698 0.66 0.297907
Target:  5'- -aCGCGCUCGGuGGUCGAagguuucaccccGCCGCgCGa -3'
miRNA:   3'- gcGCGCGGGCU-CCAGCU------------CGGCGgGCa -5'
23337 5' -65.6 NC_005259.1 + 55615 0.66 0.291173
Target:  5'- uCGCGCGCCUuggccGGGaUCaGGGCCuguagacgaGCCCGUg -3'
miRNA:   3'- -GCGCGCGGGc----UCC-AG-CUCGG---------CGGGCA- -5'
23337 5' -65.6 NC_005259.1 + 32782 0.67 0.287191
Target:  5'- uGCGUggcacccgagucguaGCCCGAGGUCGAucccgacgcaccGCCGUCg-- -3'
miRNA:   3'- gCGCG---------------CGGGCUCCAGCU------------CGGCGGgca -5'
23337 5' -65.6 NC_005259.1 + 26344 0.67 0.28456
Target:  5'- aGCaCGCCCucGGGcCGAGCUGCgCGUa -3'
miRNA:   3'- gCGcGCGGGc-UCCaGCUCGGCGgGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.