Results 1 - 20 of 42 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23340 | 3' | -57 | NC_005259.1 | + | 45927 | 0.66 | 0.703032 |
Target: 5'- aCCGaGGCUcUGCCCGuGCAGAUC-CCu -3' miRNA: 3'- aGGUaCUGGaGUGGGC-CGUCUAGcGG- -5' |
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23340 | 3' | -57 | NC_005259.1 | + | 40158 | 0.66 | 0.703032 |
Target: 5'- gUCgGUG-CC-CGcCCCGGCAGcUCGaCCg -3' miRNA: 3'- -AGgUACuGGaGU-GGGCCGUCuAGC-GG- -5' |
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23340 | 3' | -57 | NC_005259.1 | + | 19438 | 0.66 | 0.692544 |
Target: 5'- ----cGACCUCGCCCcgaGGCugucaucgAGAcCGCCg -3' miRNA: 3'- agguaCUGGAGUGGG---CCG--------UCUaGCGG- -5' |
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23340 | 3' | -57 | NC_005259.1 | + | 37265 | 0.66 | 0.682 |
Target: 5'- gCCA-GGCUUgaggcCGCCCGGCAGGacUUGCa -3' miRNA: 3'- aGGUaCUGGA-----GUGGGCCGUCU--AGCGg -5' |
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23340 | 3' | -57 | NC_005259.1 | + | 22541 | 0.66 | 0.682 |
Target: 5'- uUCCAgcaguccGACCUCGCCgaGGUcauGGAagcCGCCa -3' miRNA: 3'- -AGGUa------CUGGAGUGGg-CCG---UCUa--GCGG- -5' |
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23340 | 3' | -57 | NC_005259.1 | + | 19860 | 0.66 | 0.682 |
Target: 5'- --uGUGGCgCUCGCgCCcGCcgGGAUCGCCg -3' miRNA: 3'- aggUACUG-GAGUG-GGcCG--UCUAGCGG- -5' |
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23340 | 3' | -57 | NC_005259.1 | + | 68758 | 0.66 | 0.671412 |
Target: 5'- cCCGgcGACCUCGCCaucgguguacuUGaGCAGGUCGUa -3' miRNA: 3'- aGGUa-CUGGAGUGG-----------GC-CGUCUAGCGg -5' |
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23340 | 3' | -57 | NC_005259.1 | + | 23967 | 0.66 | 0.670351 |
Target: 5'- gCCGauUGACCUCguACCCGcGCGccaccacGGUgGCCa -3' miRNA: 3'- aGGU--ACUGGAG--UGGGC-CGU-------CUAgCGG- -5' |
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23340 | 3' | -57 | NC_005259.1 | + | 55802 | 0.67 | 0.660789 |
Target: 5'- gUCCuccGACggCUCACCCucggGGUAGGcCGCCg -3' miRNA: 3'- -AGGua-CUG--GAGUGGG----CCGUCUaGCGG- -5' |
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23340 | 3' | -57 | NC_005259.1 | + | 7604 | 0.67 | 0.660789 |
Target: 5'- gUCgGUGAcacCCUCACCCacgagGGCcGGAccuacaccgUCGCCg -3' miRNA: 3'- -AGgUACU---GGAGUGGG-----CCG-UCU---------AGCGG- -5' |
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23340 | 3' | -57 | NC_005259.1 | + | 27890 | 0.67 | 0.639477 |
Target: 5'- aCCAcGAUC-CACCUGG--GGUCGCCg -3' miRNA: 3'- aGGUaCUGGaGUGGGCCguCUAGCGG- -5' |
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23340 | 3' | -57 | NC_005259.1 | + | 26547 | 0.67 | 0.639477 |
Target: 5'- aCCAcGAUCUCACCgaGGCuGuagcCGCCg -3' miRNA: 3'- aGGUaCUGGAGUGGg-CCGuCua--GCGG- -5' |
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23340 | 3' | -57 | NC_005259.1 | + | 58418 | 0.67 | 0.61814 |
Target: 5'- aUCAgaGAUC-CACCgGGCAGAUUGCg -3' miRNA: 3'- aGGUa-CUGGaGUGGgCCGUCUAGCGg -5' |
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23340 | 3' | -57 | NC_005259.1 | + | 20162 | 0.67 | 0.61814 |
Target: 5'- gCCcUGGCCaccgCGCCCgccgccucGGCugacgAGAUCGCCg -3' miRNA: 3'- aGGuACUGGa---GUGGG--------CCG-----UCUAGCGG- -5' |
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23340 | 3' | -57 | NC_005259.1 | + | 31539 | 0.67 | 0.607485 |
Target: 5'- gCCGUGAUagaUCGCCUuGUAGggUGCCg -3' miRNA: 3'- aGGUACUGg--AGUGGGcCGUCuaGCGG- -5' |
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23340 | 3' | -57 | NC_005259.1 | + | 44840 | 0.68 | 0.596849 |
Target: 5'- aUCCGacACCgCGCCCGaGCAG-UCGCUc -3' miRNA: 3'- -AGGUacUGGaGUGGGC-CGUCuAGCGG- -5' |
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23340 | 3' | -57 | NC_005259.1 | + | 67830 | 0.68 | 0.596849 |
Target: 5'- gUCCucGACCggcaGCCCGGUgagcGGGUCGaCCa -3' miRNA: 3'- -AGGuaCUGGag--UGGGCCG----UCUAGC-GG- -5' |
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23340 | 3' | -57 | NC_005259.1 | + | 18967 | 0.68 | 0.596849 |
Target: 5'- --gGUGACCUCgccgcguacaucGCCCGGCAcgaGAUCGg- -3' miRNA: 3'- aggUACUGGAG------------UGGGCCGU---CUAGCgg -5' |
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23340 | 3' | -57 | NC_005259.1 | + | 48620 | 0.68 | 0.586242 |
Target: 5'- gCCGUGcgcacuGCCUCGCCgagaCGGgcugcCAGAUCGUCg -3' miRNA: 3'- aGGUAC------UGGAGUGG----GCC-----GUCUAGCGG- -5' |
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23340 | 3' | -57 | NC_005259.1 | + | 62546 | 0.68 | 0.57567 |
Target: 5'- gUCCGaGagauaGCCUCACCgGGCAGcg-GCCa -3' miRNA: 3'- -AGGUaC-----UGGAGUGGgCCGUCuagCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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