Results 1 - 20 of 80 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23349 | 5' | -62.2 | NC_005259.1 | + | 18851 | 0.66 | 0.47301 |
Target: 5'- cUCGCCGGUGCCgugcaacgguUGCgCGCGUgggaggCCAaCCa -3' miRNA: 3'- cGGCGGCCACGG----------AUG-GCGCA------GGU-GGc -5' |
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23349 | 5' | -62.2 | NC_005259.1 | + | 15542 | 0.66 | 0.472069 |
Target: 5'- cGCCgucacugGCCGGUGCC-ACCcucagGUGgCCACCc -3' miRNA: 3'- -CGG-------CGGCCACGGaUGG-----CGCaGGUGGc -5' |
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23349 | 5' | -62.2 | NC_005259.1 | + | 53740 | 0.66 | 0.463649 |
Target: 5'- uGUCGCCgGGUGUCcACUcgGUG-CCGCCGa -3' miRNA: 3'- -CGGCGG-CCACGGaUGG--CGCaGGUGGC- -5' |
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23349 | 5' | -62.2 | NC_005259.1 | + | 3295 | 0.66 | 0.454385 |
Target: 5'- cUCGCCGGUcCCUcggcgagcGCUGCGUCgacgugagCGCCGg -3' miRNA: 3'- cGGCGGCCAcGGA--------UGGCGCAG--------GUGGC- -5' |
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23349 | 5' | -62.2 | NC_005259.1 | + | 13429 | 0.66 | 0.454385 |
Target: 5'- cGCCGCCGGgGCCgcGCUagGCGUgaCCGUCGg -3' miRNA: 3'- -CGGCGGCCaCGGa-UGG--CGCA--GGUGGC- -5' |
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23349 | 5' | -62.2 | NC_005259.1 | + | 67757 | 0.66 | 0.454385 |
Target: 5'- gGCCGCCccgGCC-ACCG-G-CCACCGa -3' miRNA: 3'- -CGGCGGccaCGGaUGGCgCaGGUGGC- -5' |
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23349 | 5' | -62.2 | NC_005259.1 | + | 39902 | 0.66 | 0.453464 |
Target: 5'- cGCCGCCGcccGCCUcgauccgucgaggGCCGCGUCgAggUCGu -3' miRNA: 3'- -CGGCGGCca-CGGA-------------UGGCGCAGgU--GGC- -5' |
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23349 | 5' | -62.2 | NC_005259.1 | + | 14495 | 0.66 | 0.445223 |
Target: 5'- cGCUGCuCGGUGCCcGCaUGCa--CACCGg -3' miRNA: 3'- -CGGCG-GCCACGGaUG-GCGcagGUGGC- -5' |
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23349 | 5' | -62.2 | NC_005259.1 | + | 52769 | 0.66 | 0.445223 |
Target: 5'- aGCuCGUCGGUGUCgGCaGCGUgUGCCGu -3' miRNA: 3'- -CG-GCGGCCACGGaUGgCGCAgGUGGC- -5' |
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23349 | 5' | -62.2 | NC_005259.1 | + | 48183 | 0.66 | 0.427214 |
Target: 5'- cGCCGCCgGGUGUCggACCGgGcaUGCCGu -3' miRNA: 3'- -CGGCGG-CCACGGa-UGGCgCagGUGGC- -5' |
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23349 | 5' | -62.2 | NC_005259.1 | + | 36441 | 0.66 | 0.427214 |
Target: 5'- cGUCGCCGaG-GUCgACCGCGUCgagggugagCACCGc -3' miRNA: 3'- -CGGCGGC-CaCGGaUGGCGCAG---------GUGGC- -5' |
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23349 | 5' | -62.2 | NC_005259.1 | + | 67178 | 0.66 | 0.427214 |
Target: 5'- uGCCGCCGaugaUGCCcGCCuCGUCUcccucGCCGc -3' miRNA: 3'- -CGGCGGCc---ACGGaUGGcGCAGG-----UGGC- -5' |
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23349 | 5' | -62.2 | NC_005259.1 | + | 17762 | 0.67 | 0.418373 |
Target: 5'- gGCCGCCGcGcGCCggGCCGag-CgCACCGa -3' miRNA: 3'- -CGGCGGC-CaCGGa-UGGCgcaG-GUGGC- -5' |
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23349 | 5' | -62.2 | NC_005259.1 | + | 22612 | 0.67 | 0.413123 |
Target: 5'- cGCCGCCGaccGCCgcccgaucaucuucGCCGCGUCggucgaCGCCGc -3' miRNA: 3'- -CGGCGGCca-CGGa-------------UGGCGCAG------GUGGC- -5' |
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23349 | 5' | -62.2 | NC_005259.1 | + | 37399 | 0.67 | 0.409644 |
Target: 5'- cGCCGCCcauGGUGUUguugacGCCGC--CCGCCGu -3' miRNA: 3'- -CGGCGG---CCACGGa-----UGGCGcaGGUGGC- -5' |
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23349 | 5' | -62.2 | NC_005259.1 | + | 55694 | 0.67 | 0.409644 |
Target: 5'- cCCGUCGGcaGCCUcguugaugGCCGCGagCACCu -3' miRNA: 3'- cGGCGGCCa-CGGA--------UGGCGCagGUGGc -5' |
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23349 | 5' | -62.2 | NC_005259.1 | + | 14329 | 0.67 | 0.409644 |
Target: 5'- cGCCGCCGcccgcGUGCggGCCGCcgaCGCCa -3' miRNA: 3'- -CGGCGGC-----CACGgaUGGCGcagGUGGc -5' |
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23349 | 5' | -62.2 | NC_005259.1 | + | 35068 | 0.67 | 0.40103 |
Target: 5'- cGCCGCCcuugcugacGGUgGCCUG-CGCaGUCCACa- -3' miRNA: 3'- -CGGCGG---------CCA-CGGAUgGCG-CAGGUGgc -5' |
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23349 | 5' | -62.2 | NC_005259.1 | + | 53326 | 0.67 | 0.400175 |
Target: 5'- cCUGCCGGUgGCCUcACCuacgauuacguucGCGcCCGCCu -3' miRNA: 3'- cGGCGGCCA-CGGA-UGG-------------CGCaGGUGGc -5' |
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23349 | 5' | -62.2 | NC_005259.1 | + | 58442 | 0.67 | 0.392532 |
Target: 5'- cGCUGaUCGGUgGCCUuggugAUCGCGgCCACCa -3' miRNA: 3'- -CGGC-GGCCA-CGGA-----UGGCGCaGGUGGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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