miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23349 5' -62.2 NC_005259.1 + 18851 0.66 0.47301
Target:  5'- cUCGCCGGUGCCgugcaacgguUGCgCGCGUgggaggCCAaCCa -3'
miRNA:   3'- cGGCGGCCACGG----------AUG-GCGCA------GGU-GGc -5'
23349 5' -62.2 NC_005259.1 + 15542 0.66 0.472069
Target:  5'- cGCCgucacugGCCGGUGCC-ACCcucagGUGgCCACCc -3'
miRNA:   3'- -CGG-------CGGCCACGGaUGG-----CGCaGGUGGc -5'
23349 5' -62.2 NC_005259.1 + 53740 0.66 0.463649
Target:  5'- uGUCGCCgGGUGUCcACUcgGUG-CCGCCGa -3'
miRNA:   3'- -CGGCGG-CCACGGaUGG--CGCaGGUGGC- -5'
23349 5' -62.2 NC_005259.1 + 3295 0.66 0.454385
Target:  5'- cUCGCCGGUcCCUcggcgagcGCUGCGUCgacgugagCGCCGg -3'
miRNA:   3'- cGGCGGCCAcGGA--------UGGCGCAG--------GUGGC- -5'
23349 5' -62.2 NC_005259.1 + 13429 0.66 0.454385
Target:  5'- cGCCGCCGGgGCCgcGCUagGCGUgaCCGUCGg -3'
miRNA:   3'- -CGGCGGCCaCGGa-UGG--CGCA--GGUGGC- -5'
23349 5' -62.2 NC_005259.1 + 67757 0.66 0.454385
Target:  5'- gGCCGCCccgGCC-ACCG-G-CCACCGa -3'
miRNA:   3'- -CGGCGGccaCGGaUGGCgCaGGUGGC- -5'
23349 5' -62.2 NC_005259.1 + 39902 0.66 0.453464
Target:  5'- cGCCGCCGcccGCCUcgauccgucgaggGCCGCGUCgAggUCGu -3'
miRNA:   3'- -CGGCGGCca-CGGA-------------UGGCGCAGgU--GGC- -5'
23349 5' -62.2 NC_005259.1 + 14495 0.66 0.445223
Target:  5'- cGCUGCuCGGUGCCcGCaUGCa--CACCGg -3'
miRNA:   3'- -CGGCG-GCCACGGaUG-GCGcagGUGGC- -5'
23349 5' -62.2 NC_005259.1 + 52769 0.66 0.445223
Target:  5'- aGCuCGUCGGUGUCgGCaGCGUgUGCCGu -3'
miRNA:   3'- -CG-GCGGCCACGGaUGgCGCAgGUGGC- -5'
23349 5' -62.2 NC_005259.1 + 36441 0.66 0.427214
Target:  5'- cGUCGCCGaG-GUCgACCGCGUCgagggugagCACCGc -3'
miRNA:   3'- -CGGCGGC-CaCGGaUGGCGCAG---------GUGGC- -5'
23349 5' -62.2 NC_005259.1 + 48183 0.66 0.427214
Target:  5'- cGCCGCCgGGUGUCggACCGgGcaUGCCGu -3'
miRNA:   3'- -CGGCGG-CCACGGa-UGGCgCagGUGGC- -5'
23349 5' -62.2 NC_005259.1 + 67178 0.66 0.427214
Target:  5'- uGCCGCCGaugaUGCCcGCCuCGUCUcccucGCCGc -3'
miRNA:   3'- -CGGCGGCc---ACGGaUGGcGCAGG-----UGGC- -5'
23349 5' -62.2 NC_005259.1 + 17762 0.67 0.418373
Target:  5'- gGCCGCCGcGcGCCggGCCGag-CgCACCGa -3'
miRNA:   3'- -CGGCGGC-CaCGGa-UGGCgcaG-GUGGC- -5'
23349 5' -62.2 NC_005259.1 + 22612 0.67 0.413123
Target:  5'- cGCCGCCGaccGCCgcccgaucaucuucGCCGCGUCggucgaCGCCGc -3'
miRNA:   3'- -CGGCGGCca-CGGa-------------UGGCGCAG------GUGGC- -5'
23349 5' -62.2 NC_005259.1 + 55694 0.67 0.409644
Target:  5'- cCCGUCGGcaGCCUcguugaugGCCGCGagCACCu -3'
miRNA:   3'- cGGCGGCCa-CGGA--------UGGCGCagGUGGc -5'
23349 5' -62.2 NC_005259.1 + 14329 0.67 0.409644
Target:  5'- cGCCGCCGcccgcGUGCggGCCGCcgaCGCCa -3'
miRNA:   3'- -CGGCGGC-----CACGgaUGGCGcagGUGGc -5'
23349 5' -62.2 NC_005259.1 + 37399 0.67 0.409644
Target:  5'- cGCCGCCcauGGUGUUguugacGCCGC--CCGCCGu -3'
miRNA:   3'- -CGGCGG---CCACGGa-----UGGCGcaGGUGGC- -5'
23349 5' -62.2 NC_005259.1 + 35068 0.67 0.40103
Target:  5'- cGCCGCCcuugcugacGGUgGCCUG-CGCaGUCCACa- -3'
miRNA:   3'- -CGGCGG---------CCA-CGGAUgGCG-CAGGUGgc -5'
23349 5' -62.2 NC_005259.1 + 53326 0.67 0.400175
Target:  5'- cCUGCCGGUgGCCUcACCuacgauuacguucGCGcCCGCCu -3'
miRNA:   3'- cGGCGGCCA-CGGA-UGG-------------CGCaGGUGGc -5'
23349 5' -62.2 NC_005259.1 + 58442 0.67 0.392532
Target:  5'- cGCUGaUCGGUgGCCUuggugAUCGCGgCCACCa -3'
miRNA:   3'- -CGGC-GGCCA-CGGA-----UGGCGCaGGUGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.