Results 21 - 40 of 80 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23349 | 5' | -62.2 | NC_005259.1 | + | 47943 | 0.71 | 0.219888 |
Target: 5'- aGCCGaugacggCGGUGCCgauggccGCCGCG-CCGCCc -3' miRNA: 3'- -CGGCg------GCCACGGa------UGGCGCaGGUGGc -5' |
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23349 | 5' | -62.2 | NC_005259.1 | + | 46927 | 0.81 | 0.045566 |
Target: 5'- cGCCGCCGaGcuUGCCcGCCGCG-CCGCCGa -3' miRNA: 3'- -CGGCGGC-C--ACGGaUGGCGCaGGUGGC- -5' |
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23349 | 5' | -62.2 | NC_005259.1 | + | 46862 | 0.68 | 0.328896 |
Target: 5'- cGCUGUCGGUcgagGCUUgaAUCGCG-CCGCCGc -3' miRNA: 3'- -CGGCGGCCA----CGGA--UGGCGCaGGUGGC- -5' |
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23349 | 5' | -62.2 | NC_005259.1 | + | 46786 | 0.7 | 0.259284 |
Target: 5'- cCCGCCGGgccgaacaccgaGCCUGCgaGCGcaCCACCGg -3' miRNA: 3'- cGGCGGCCa-----------CGGAUGg-CGCa-GGUGGC- -5' |
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23349 | 5' | -62.2 | NC_005259.1 | + | 45775 | 0.69 | 0.300056 |
Target: 5'- cUCGCCGGgUGCCagcACCGCGUUgACgGu -3' miRNA: 3'- cGGCGGCC-ACGGa--UGGCGCAGgUGgC- -5' |
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23349 | 5' | -62.2 | NC_005259.1 | + | 45641 | 0.79 | 0.061403 |
Target: 5'- aGCgCGCCGGUGCC-GCCGUGaacaCCGCCGu -3' miRNA: 3'- -CG-GCGGCCACGGaUGGCGCa---GGUGGC- -5' |
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23349 | 5' | -62.2 | NC_005259.1 | + | 45489 | 0.76 | 0.09424 |
Target: 5'- gGCCGCUGGUgGCCUuggucGCUGUGgCCACCGc -3' miRNA: 3'- -CGGCGGCCA-CGGA-----UGGCGCaGGUGGC- -5' |
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23349 | 5' | -62.2 | NC_005259.1 | + | 45324 | 0.7 | 0.260525 |
Target: 5'- cGCCGCCGaacugcgugGCCUgcGCCGCcugggCCGCCGc -3' miRNA: 3'- -CGGCGGCca-------CGGA--UGGCGca---GGUGGC- -5' |
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23349 | 5' | -62.2 | NC_005259.1 | + | 45004 | 0.71 | 0.209314 |
Target: 5'- aCCGCCGaccGCCgggGCCGCG-CCGCCc -3' miRNA: 3'- cGGCGGCca-CGGa--UGGCGCaGGUGGc -5' |
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23349 | 5' | -62.2 | NC_005259.1 | + | 44623 | 0.68 | 0.359733 |
Target: 5'- uGCCGCCguaGGUugcGCCUugACCG-GUgCCGCCGc -3' miRNA: 3'- -CGGCGG---CCA---CGGA--UGGCgCA-GGUGGC- -5' |
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23349 | 5' | -62.2 | NC_005259.1 | + | 43685 | 0.73 | 0.162828 |
Target: 5'- cGCCGCCGGUGgcgaaCCUcuugaaACCGCG-CgACCGc -3' miRNA: 3'- -CGGCGGCCAC-----GGA------UGGCGCaGgUGGC- -5' |
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23349 | 5' | -62.2 | NC_005259.1 | + | 43253 | 0.72 | 0.193792 |
Target: 5'- uGCCGCCcgcgccgGGUGCCUgagaguugACCGCagcgcccgCCGCCGa -3' miRNA: 3'- -CGGCGG-------CCACGGA--------UGGCGca------GGUGGC- -5' |
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23349 | 5' | -62.2 | NC_005259.1 | + | 42201 | 0.74 | 0.146983 |
Target: 5'- cGCCGUCGcGauggaUGCCcGCCGCG-CCGCCGu -3' miRNA: 3'- -CGGCGGC-C-----ACGGaUGGCGCaGGUGGC- -5' |
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23349 | 5' | -62.2 | NC_005259.1 | + | 40451 | 0.69 | 0.314225 |
Target: 5'- gGCCuGCCGGUGUgguugacguaCUGCCGgG-CCGCgCGg -3' miRNA: 3'- -CGG-CGGCCACG----------GAUGGCgCaGGUG-GC- -5' |
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23349 | 5' | -62.2 | NC_005259.1 | + | 39902 | 0.66 | 0.453464 |
Target: 5'- cGCCGCCGcccGCCUcgauccgucgaggGCCGCGUCgAggUCGu -3' miRNA: 3'- -CGGCGGCca-CGGA-------------UGGCGCAGgU--GGC- -5' |
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23349 | 5' | -62.2 | NC_005259.1 | + | 38926 | 0.68 | 0.367751 |
Target: 5'- aGCaCGUCGGUGUUgcugugcccggUGCCGCuG-CCGCCGa -3' miRNA: 3'- -CG-GCGGCCACGG-----------AUGGCG-CaGGUGGC- -5' |
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23349 | 5' | -62.2 | NC_005259.1 | + | 37663 | 0.72 | 0.17974 |
Target: 5'- cGCCGCCGGUGCC-GCCacgguugguguauGUGcCCgcGCCGg -3' miRNA: 3'- -CGGCGGCCACGGaUGG-------------CGCaGG--UGGC- -5' |
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23349 | 5' | -62.2 | NC_005259.1 | + | 37399 | 0.67 | 0.409644 |
Target: 5'- cGCCGCCcauGGUGUUguugacGCCGC--CCGCCGu -3' miRNA: 3'- -CGGCGG---CCACGGa-----UGGCGcaGGUGGC- -5' |
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23349 | 5' | -62.2 | NC_005259.1 | + | 37222 | 0.71 | 0.236601 |
Target: 5'- cGCCGCCGGggcgcugGCCcgUGCCGgauUGgcugCCGCCGu -3' miRNA: 3'- -CGGCGGCCa------CGG--AUGGC---GCa---GGUGGC- -5' |
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23349 | 5' | -62.2 | NC_005259.1 | + | 36719 | 0.68 | 0.321498 |
Target: 5'- uGCCGCuCGa--CCcGCCGCGcCCGCCGg -3' miRNA: 3'- -CGGCG-GCcacGGaUGGCGCaGGUGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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