miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23351 5' -56 NC_005259.1 + 68214 0.72 0.407588
Target:  5'- uGCuuCugCUCgGugGACCACGACCu- -3'
miRNA:   3'- gCGu-GugGAGgCugUUGGUGCUGGcu -5'
23351 5' -56 NC_005259.1 + 67717 0.66 0.78373
Target:  5'- gGCAUACCcgucagccucgaUCCGAUAcCgGCGGCCa- -3'
miRNA:   3'- gCGUGUGG------------AGGCUGUuGgUGCUGGcu -5'
23351 5' -56 NC_005259.1 + 66995 0.66 0.744234
Target:  5'- uGUACGCCUCaCGcACGACaCGCGugUa- -3'
miRNA:   3'- gCGUGUGGAG-GC-UGUUG-GUGCugGcu -5'
23351 5' -56 NC_005259.1 + 65130 0.68 0.628808
Target:  5'- gGCGCACCggcggccacccCCGACAagucgaaacggGCCAUGGCCc- -3'
miRNA:   3'- gCGUGUGGa----------GGCUGU-----------UGGUGCUGGcu -5'
23351 5' -56 NC_005259.1 + 64772 0.71 0.493242
Target:  5'- gGUGCGCCU-CGGCGGCCcgcuGCGACUGGc -3'
miRNA:   3'- gCGUGUGGAgGCUGUUGG----UGCUGGCU- -5'
23351 5' -56 NC_005259.1 + 64594 0.66 0.78469
Target:  5'- aGCACACCaacgaggugacugaCGGCGAgCGCGACgGGc -3'
miRNA:   3'- gCGUGUGGag------------GCUGUUgGUGCUGgCU- -5'
23351 5' -56 NC_005259.1 + 63669 0.69 0.59685
Target:  5'- cCGgACACCUCgGGCAcCgGCGcGCCGGg -3'
miRNA:   3'- -GCgUGUGGAGgCUGUuGgUGC-UGGCU- -5'
23351 5' -56 NC_005259.1 + 63375 0.66 0.734068
Target:  5'- uGCACGuCCUcgucgCCGAUGGCCcACG-CCGAc -3'
miRNA:   3'- gCGUGU-GGA-----GGCUGUUGG-UGCuGGCU- -5'
23351 5' -56 NC_005259.1 + 60180 0.66 0.774053
Target:  5'- gGCgaACGCCUgcucgaCCGACcgGGCCACGaucucGCCGAu -3'
miRNA:   3'- gCG--UGUGGA------GGCUG--UUGGUGC-----UGGCU- -5'
23351 5' -56 NC_005259.1 + 59384 0.66 0.774053
Target:  5'- cCGCACcguGCCUCCGcgcGCGAgCGUGACCu- -3'
miRNA:   3'- -GCGUG---UGGAGGC---UGUUgGUGCUGGcu -5'
23351 5' -56 NC_005259.1 + 56872 0.68 0.628808
Target:  5'- aGCACACCcUCGAUGAgC-CGACCGc -3'
miRNA:   3'- gCGUGUGGaGGCUGUUgGuGCUGGCu -5'
23351 5' -56 NC_005259.1 + 56162 0.67 0.713456
Target:  5'- aGCACGuCCU-CGuuGGCCACGguGCCGAc -3'
miRNA:   3'- gCGUGU-GGAgGCugUUGGUGC--UGGCU- -5'
23351 5' -56 NC_005259.1 + 53355 0.66 0.78373
Target:  5'- uCGCGCccGCCU-CGACGGCUAa-ACCGAg -3'
miRNA:   3'- -GCGUG--UGGAgGCUGUUGGUgcUGGCU- -5'
23351 5' -56 NC_005259.1 + 52903 0.66 0.734068
Target:  5'- aCGgGCACCUgCUcACGACCGcCGACuCGAu -3'
miRNA:   3'- -GCgUGUGGA-GGcUGUUGGU-GCUG-GCU- -5'
23351 5' -56 NC_005259.1 + 52183 0.67 0.692544
Target:  5'- aGCAgGaCCgcgCCGACAACgCACGGCUc- -3'
miRNA:   3'- gCGUgU-GGa--GGCUGUUG-GUGCUGGcu -5'
23351 5' -56 NC_005259.1 + 52130 0.68 0.628808
Target:  5'- cCGCAcCGCCgUCCGGC-ACCuCG-CCGAg -3'
miRNA:   3'- -GCGU-GUGG-AGGCUGuUGGuGCuGGCU- -5'
23351 5' -56 NC_005259.1 + 51556 0.66 0.734068
Target:  5'- uGCACgacguugggGCCaacgaUCCGGCAGCCGguGCCGAc -3'
miRNA:   3'- gCGUG---------UGG-----AGGCUGUUGGUgcUGGCU- -5'
23351 5' -56 NC_005259.1 + 48398 0.68 0.628808
Target:  5'- cCGCcgACGCCcgCCGuCGagucACCGCGACCGc -3'
miRNA:   3'- -GCG--UGUGGa-GGCuGU----UGGUGCUGGCu -5'
23351 5' -56 NC_005259.1 + 48125 0.69 0.586242
Target:  5'- aGCACACCgCCu-CGACCACcGCCGc -3'
miRNA:   3'- gCGUGUGGaGGcuGUUGGUGcUGGCu -5'
23351 5' -56 NC_005259.1 + 47000 0.68 0.671412
Target:  5'- gGUGCGCCaCgCGAggaagcCGACCACGACCGc -3'
miRNA:   3'- gCGUGUGGaG-GCU------GUUGGUGCUGGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.