Results 1 - 20 of 65 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23354 | 3' | -63.8 | NC_005259.1 | + | 16812 | 0.66 | 0.383969 |
Target: 5'- cGCGCUCGgGGcCGG-GGUCAUGauCCGa -3' miRNA: 3'- cUGCGAGCgCC-GCCaCCGGUGC--GGCg -5' |
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23354 | 3' | -63.8 | NC_005259.1 | + | 60420 | 0.66 | 0.383969 |
Target: 5'- -cUGCUCGgGGguggcccaCGGggcGGCCACGCC-Cg -3' miRNA: 3'- cuGCGAGCgCC--------GCCa--CCGGUGCGGcG- -5' |
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23354 | 3' | -63.8 | NC_005259.1 | + | 57020 | 0.66 | 0.383969 |
Target: 5'- aGCGCggcucggCGCGGUGG-GGUCGCacucGUCGUa -3' miRNA: 3'- cUGCGa------GCGCCGCCaCCGGUG----CGGCG- -5' |
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23354 | 3' | -63.8 | NC_005259.1 | + | 42246 | 0.66 | 0.383969 |
Target: 5'- cGACcacCUCGCGcugugaGGUGGUCACGUCGa -3' miRNA: 3'- -CUGc--GAGCGCcg----CCACCGGUGCGGCg -5' |
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23354 | 3' | -63.8 | NC_005259.1 | + | 49985 | 0.66 | 0.381488 |
Target: 5'- cGCGCacggaUCGCGuGCGGacGGCUgcccucgugcacggGCGCUGCg -3' miRNA: 3'- cUGCG-----AGCGC-CGCCa-CCGG--------------UGCGGCG- -5' |
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23354 | 3' | -63.8 | NC_005259.1 | + | 39475 | 0.66 | 0.379017 |
Target: 5'- -cCGUcgUCGCGGUagcacGagauaucgagcuugaUGGCCGCGCCGCu -3' miRNA: 3'- cuGCG--AGCGCCGc----C---------------ACCGGUGCGGCG- -5' |
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23354 | 3' | -63.8 | NC_005259.1 | + | 6204 | 0.66 | 0.375739 |
Target: 5'- aGCGUgaGCGG-GGUGagccGCCGCGCCGa -3' miRNA: 3'- cUGCGagCGCCgCCAC----CGGUGCGGCg -5' |
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23354 | 3' | -63.8 | NC_005259.1 | + | 49082 | 0.66 | 0.375739 |
Target: 5'- gGAuCGCUCGagGGUGucaUGGCCGC-CCGCc -3' miRNA: 3'- -CU-GCGAGCg-CCGCc--ACCGGUGcGGCG- -5' |
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23354 | 3' | -63.8 | NC_005259.1 | + | 8931 | 0.66 | 0.375739 |
Target: 5'- --gGCUCGUuugucgaucaCGGUGGgCGCGCCGUg -3' miRNA: 3'- cugCGAGCGcc--------GCCACCgGUGCGGCG- -5' |
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23354 | 3' | -63.8 | NC_005259.1 | + | 14727 | 0.66 | 0.367628 |
Target: 5'- cGCGCUCGuCGccgagauguacGCGcUGGCCGgGCCGg -3' miRNA: 3'- cUGCGAGC-GC-----------CGCcACCGGUgCGGCg -5' |
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23354 | 3' | -63.8 | NC_005259.1 | + | 37057 | 0.66 | 0.367628 |
Target: 5'- -cCGCccacgGCGGCGGUGuCCACGUccaCGCa -3' miRNA: 3'- cuGCGag---CGCCGCCACcGGUGCG---GCG- -5' |
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23354 | 3' | -63.8 | NC_005259.1 | + | 63623 | 0.66 | 0.367628 |
Target: 5'- cGACGCcugauagaucaUCGUGGCGaGcugcucgcUGGCCgggACGCCGg -3' miRNA: 3'- -CUGCG-----------AGCGCCGC-C--------ACCGG---UGCGGCg -5' |
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23354 | 3' | -63.8 | NC_005259.1 | + | 20057 | 0.66 | 0.367628 |
Target: 5'- cGAUGUcCGCuGCGGUGGCggucgucacCACGUCGa -3' miRNA: 3'- -CUGCGaGCGcCGCCACCG---------GUGCGGCg -5' |
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23354 | 3' | -63.8 | NC_005259.1 | + | 40120 | 0.66 | 0.367628 |
Target: 5'- uGCGCUCGUGGaauuGGcgGGCgAgcuCGCCGUc -3' miRNA: 3'- cUGCGAGCGCCg---CCa-CCGgU---GCGGCG- -5' |
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23354 | 3' | -63.8 | NC_005259.1 | + | 60671 | 0.66 | 0.359638 |
Target: 5'- uGACGCaCGCGuucugcaccgaGCGGUGGC-ACGCaccaaaGCa -3' miRNA: 3'- -CUGCGaGCGC-----------CGCCACCGgUGCGg-----CG- -5' |
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23354 | 3' | -63.8 | NC_005259.1 | + | 50239 | 0.66 | 0.359638 |
Target: 5'- aGCGCgggCGCGGaucGUGGCCAacgggcuacuCGCUGUc -3' miRNA: 3'- cUGCGa--GCGCCgc-CACCGGU----------GCGGCG- -5' |
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23354 | 3' | -63.8 | NC_005259.1 | + | 45005 | 0.66 | 0.359638 |
Target: 5'- -cCGC-CGacCGcCGG-GGCCGCGCCGCc -3' miRNA: 3'- cuGCGaGC--GCcGCCaCCGGUGCGGCG- -5' |
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23354 | 3' | -63.8 | NC_005259.1 | + | 55010 | 0.66 | 0.359638 |
Target: 5'- --gGCUCGCuuGGCGGUcgucucGGCaCGgGCUGCc -3' miRNA: 3'- cugCGAGCG--CCGCCA------CCG-GUgCGGCG- -5' |
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23354 | 3' | -63.8 | NC_005259.1 | + | 61359 | 0.66 | 0.344026 |
Target: 5'- -uCGCUCGgGGCGGUccaaCCACcuGCUGCc -3' miRNA: 3'- cuGCGAGCgCCGCCAcc--GGUG--CGGCG- -5' |
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23354 | 3' | -63.8 | NC_005259.1 | + | 46946 | 0.66 | 0.344026 |
Target: 5'- cGCGC-CGCcgaccGCGuugagcuuguUGGCCACGCCGCc -3' miRNA: 3'- cUGCGaGCGc----CGCc---------ACCGGUGCGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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