miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23354 3' -63.8 NC_005259.1 + 42246 0.66 0.383969
Target:  5'- cGACcacCUCGCGcugugaGGUGGUCACGUCGa -3'
miRNA:   3'- -CUGc--GAGCGCcg----CCACCGGUGCGGCg -5'
23354 3' -63.8 NC_005259.1 + 57020 0.66 0.383969
Target:  5'- aGCGCggcucggCGCGGUGG-GGUCGCacucGUCGUa -3'
miRNA:   3'- cUGCGa------GCGCCGCCaCCGGUG----CGGCG- -5'
23354 3' -63.8 NC_005259.1 + 60420 0.66 0.383969
Target:  5'- -cUGCUCGgGGguggcccaCGGggcGGCCACGCC-Cg -3'
miRNA:   3'- cuGCGAGCgCC--------GCCa--CCGGUGCGGcG- -5'
23354 3' -63.8 NC_005259.1 + 16812 0.66 0.383969
Target:  5'- cGCGCUCGgGGcCGG-GGUCAUGauCCGa -3'
miRNA:   3'- cUGCGAGCgCC-GCCaCCGGUGC--GGCg -5'
23354 3' -63.8 NC_005259.1 + 49985 0.66 0.381488
Target:  5'- cGCGCacggaUCGCGuGCGGacGGCUgcccucgugcacggGCGCUGCg -3'
miRNA:   3'- cUGCG-----AGCGC-CGCCa-CCGG--------------UGCGGCG- -5'
23354 3' -63.8 NC_005259.1 + 39475 0.66 0.379017
Target:  5'- -cCGUcgUCGCGGUagcacGagauaucgagcuugaUGGCCGCGCCGCu -3'
miRNA:   3'- cuGCG--AGCGCCGc----C---------------ACCGGUGCGGCG- -5'
23354 3' -63.8 NC_005259.1 + 6204 0.66 0.375739
Target:  5'- aGCGUgaGCGG-GGUGagccGCCGCGCCGa -3'
miRNA:   3'- cUGCGagCGCCgCCAC----CGGUGCGGCg -5'
23354 3' -63.8 NC_005259.1 + 49082 0.66 0.375739
Target:  5'- gGAuCGCUCGagGGUGucaUGGCCGC-CCGCc -3'
miRNA:   3'- -CU-GCGAGCg-CCGCc--ACCGGUGcGGCG- -5'
23354 3' -63.8 NC_005259.1 + 8931 0.66 0.375739
Target:  5'- --gGCUCGUuugucgaucaCGGUGGgCGCGCCGUg -3'
miRNA:   3'- cugCGAGCGcc--------GCCACCgGUGCGGCG- -5'
23354 3' -63.8 NC_005259.1 + 20057 0.66 0.367628
Target:  5'- cGAUGUcCGCuGCGGUGGCggucgucacCACGUCGa -3'
miRNA:   3'- -CUGCGaGCGcCGCCACCG---------GUGCGGCg -5'
23354 3' -63.8 NC_005259.1 + 37057 0.66 0.367628
Target:  5'- -cCGCccacgGCGGCGGUGuCCACGUccaCGCa -3'
miRNA:   3'- cuGCGag---CGCCGCCACcGGUGCG---GCG- -5'
23354 3' -63.8 NC_005259.1 + 14727 0.66 0.367628
Target:  5'- cGCGCUCGuCGccgagauguacGCGcUGGCCGgGCCGg -3'
miRNA:   3'- cUGCGAGC-GC-----------CGCcACCGGUgCGGCg -5'
23354 3' -63.8 NC_005259.1 + 63623 0.66 0.367628
Target:  5'- cGACGCcugauagaucaUCGUGGCGaGcugcucgcUGGCCgggACGCCGg -3'
miRNA:   3'- -CUGCG-----------AGCGCCGC-C--------ACCGG---UGCGGCg -5'
23354 3' -63.8 NC_005259.1 + 40120 0.66 0.367628
Target:  5'- uGCGCUCGUGGaauuGGcgGGCgAgcuCGCCGUc -3'
miRNA:   3'- cUGCGAGCGCCg---CCa-CCGgU---GCGGCG- -5'
23354 3' -63.8 NC_005259.1 + 60671 0.66 0.359638
Target:  5'- uGACGCaCGCGuucugcaccgaGCGGUGGC-ACGCaccaaaGCa -3'
miRNA:   3'- -CUGCGaGCGC-----------CGCCACCGgUGCGg-----CG- -5'
23354 3' -63.8 NC_005259.1 + 50239 0.66 0.359638
Target:  5'- aGCGCgggCGCGGaucGUGGCCAacgggcuacuCGCUGUc -3'
miRNA:   3'- cUGCGa--GCGCCgc-CACCGGU----------GCGGCG- -5'
23354 3' -63.8 NC_005259.1 + 45005 0.66 0.359638
Target:  5'- -cCGC-CGacCGcCGG-GGCCGCGCCGCc -3'
miRNA:   3'- cuGCGaGC--GCcGCCaCCGGUGCGGCG- -5'
23354 3' -63.8 NC_005259.1 + 55010 0.66 0.359638
Target:  5'- --gGCUCGCuuGGCGGUcgucucGGCaCGgGCUGCc -3'
miRNA:   3'- cugCGAGCG--CCGCCA------CCG-GUgCGGCG- -5'
23354 3' -63.8 NC_005259.1 + 46946 0.66 0.344026
Target:  5'- cGCGC-CGCcgaccGCGuugagcuuguUGGCCACGCCGCc -3'
miRNA:   3'- cUGCGaGCGc----CGCc---------ACCGGUGCGGCG- -5'
23354 3' -63.8 NC_005259.1 + 61359 0.66 0.344026
Target:  5'- -uCGCUCGgGGCGGUccaaCCACcuGCUGCc -3'
miRNA:   3'- cuGCGAGCgCCGCCAcc--GGUG--CGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.