miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23355 5' -57.6 NC_005259.1 + 28005 0.66 0.686185
Target:  5'- uGCCGggGcggGGUCGCCgggguugcgcGCGUUgGCCa -3'
miRNA:   3'- gUGGCuaCa--CCAGCGG----------UGCGAgUGGc -5'
23355 5' -57.6 NC_005259.1 + 26047 0.66 0.675673
Target:  5'- gCGCCGccG-GGUUgGCCAUGC-CGCCGc -3'
miRNA:   3'- -GUGGCuaCaCCAG-CGGUGCGaGUGGC- -5'
23355 5' -57.6 NC_005259.1 + 19330 0.66 0.675673
Target:  5'- gCGCUGAUGaUGGUCaGCUACGaggacgaggaCGCCGg -3'
miRNA:   3'- -GUGGCUAC-ACCAG-CGGUGCga--------GUGGC- -5'
23355 5' -57.6 NC_005259.1 + 60505 0.66 0.675673
Target:  5'- gCGCCGGUGUuGUCGUaguGCGCcaUgGCCGg -3'
miRNA:   3'- -GUGGCUACAcCAGCGg--UGCG--AgUGGC- -5'
23355 5' -57.6 NC_005259.1 + 3174 0.66 0.665122
Target:  5'- cCGgCGAUGUcaaGGUCGUCgguGCGCgCACCa -3'
miRNA:   3'- -GUgGCUACA---CCAGCGG---UGCGaGUGGc -5'
23355 5' -57.6 NC_005259.1 + 1828 0.66 0.654543
Target:  5'- cCGCCGAccUGcUCGCCGCuGC-CGCCGa -3'
miRNA:   3'- -GUGGCUacACcAGCGGUG-CGaGUGGC- -5'
23355 5' -57.6 NC_005259.1 + 3270 0.66 0.653483
Target:  5'- uGCuCGG-GUGGuuucccgUCGCCGC-CUCGCCGg -3'
miRNA:   3'- gUG-GCUaCACC-------AGCGGUGcGAGUGGC- -5'
23355 5' -57.6 NC_005259.1 + 1493 0.66 0.643943
Target:  5'- uGCgUGAggcaGUGuUCGCCACGCUCACg- -3'
miRNA:   3'- gUG-GCUa---CACcAGCGGUGCGAGUGgc -5'
23355 5' -57.6 NC_005259.1 + 37461 0.66 0.643943
Target:  5'- -cCCGAU-UGGcUgGCCACGC-CGCCGu -3'
miRNA:   3'- guGGCUAcACC-AgCGGUGCGaGUGGC- -5'
23355 5' -57.6 NC_005259.1 + 31776 0.67 0.637579
Target:  5'- uCAUCGAUGUGcugcgccuugaccgcGUCGUCAUcgaGCUCgACCGa -3'
miRNA:   3'- -GUGGCUACAC---------------CAGCGGUG---CGAG-UGGC- -5'
23355 5' -57.6 NC_005259.1 + 14174 0.67 0.633335
Target:  5'- uCGCCGGgcgGGUgGCaacCGCUCACCc -3'
miRNA:   3'- -GUGGCUacaCCAgCGgu-GCGAGUGGc -5'
23355 5' -57.6 NC_005259.1 + 57689 0.67 0.633335
Target:  5'- gACCG-UGgccaGGUUGCCGgGCUUGCCc -3'
miRNA:   3'- gUGGCuACa---CCAGCGGUgCGAGUGGc -5'
23355 5' -57.6 NC_005259.1 + 24108 0.67 0.623786
Target:  5'- aACCGAUGggaccgGGcggggacuacaccgcCGCCGCccuGCUCGCCGa -3'
miRNA:   3'- gUGGCUACa-----CCa--------------GCGGUG---CGAGUGGC- -5'
23355 5' -57.6 NC_005259.1 + 46326 0.67 0.612123
Target:  5'- -cCCGAg--GGUCGCguCGCgCACCGc -3'
miRNA:   3'- guGGCUacaCCAGCGguGCGaGUGGC- -5'
23355 5' -57.6 NC_005259.1 + 44767 0.67 0.601537
Target:  5'- gCACCGAUcccgcaucgGcGGUCGagaaCagACGCUCGCCGg -3'
miRNA:   3'- -GUGGCUA---------CaCCAGCg---G--UGCGAGUGGC- -5'
23355 5' -57.6 NC_005259.1 + 16673 0.67 0.601537
Target:  5'- cCGCCucGAUGUGGUCGgcgauCCugGg-CACCGa -3'
miRNA:   3'- -GUGG--CUACACCAGC-----GGugCgaGUGGC- -5'
23355 5' -57.6 NC_005259.1 + 36704 0.67 0.601537
Target:  5'- cCGCCGAUGagcucGUgccgcucgaccCGCCGCGCcCGCCGg -3'
miRNA:   3'- -GUGGCUACac---CA-----------GCGGUGCGaGUGGC- -5'
23355 5' -57.6 NC_005259.1 + 39887 0.67 0.601537
Target:  5'- aCACCGAaucGUuGUCGCCGcCGCcCGCCu -3'
miRNA:   3'- -GUGGCUa--CAcCAGCGGU-GCGaGUGGc -5'
23355 5' -57.6 NC_005259.1 + 20155 0.67 0.590975
Target:  5'- aGCCGGUGcccUGGcCaCCGCGCcCGCCGc -3'
miRNA:   3'- gUGGCUAC---ACCaGcGGUGCGaGUGGC- -5'
23355 5' -57.6 NC_005259.1 + 26118 0.67 0.590975
Target:  5'- cCGCCGccGccGGUCGCCgguccgACGC-CGCCGa -3'
miRNA:   3'- -GUGGCuaCa-CCAGCGG------UGCGaGUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.