miRNA display CGI


Results 1 - 20 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23360 3' -57.4 NC_005259.1 + 30765 0.66 0.703455
Target:  5'- uGCCGaCGCCGGUGgCACCGcugccguuGUUCGc -3'
miRNA:   3'- gUGGCgGUGGUCGCaGUGGCu-------CAAGC- -5'
23360 3' -57.4 NC_005259.1 + 43841 0.66 0.703455
Target:  5'- gGCCGCCGCUcGCcaUGCCGAGcgCa -3'
miRNA:   3'- gUGGCGGUGGuCGcaGUGGCUCaaGc -5'
23360 3' -57.4 NC_005259.1 + 8054 0.66 0.703455
Target:  5'- aCACCGCCggucGCCGcCGaCAUCGAGaUCGu -3'
miRNA:   3'- -GUGGCGG----UGGUcGCaGUGGCUCaAGC- -5'
23360 3' -57.4 NC_005259.1 + 11007 0.66 0.693013
Target:  5'- gCACCG-CGCCGGaCG-CGCCGAGg--- -3'
miRNA:   3'- -GUGGCgGUGGUC-GCaGUGGCUCaagc -5'
23360 3' -57.4 NC_005259.1 + 46692 0.66 0.693013
Target:  5'- aGCCGCCGCC-GCGUCcCuCGAcGcgCGu -3'
miRNA:   3'- gUGGCGGUGGuCGCAGuG-GCU-CaaGC- -5'
23360 3' -57.4 NC_005259.1 + 14384 0.66 0.693013
Target:  5'- -cUCGUCACCgAGC-UCGCCGAcacGUUCGu -3'
miRNA:   3'- guGGCGGUGG-UCGcAGUGGCU---CAAGC- -5'
23360 3' -57.4 NC_005259.1 + 45342 0.66 0.682515
Target:  5'- cCugCGCCGCCuGgGcCGCCGcGUagUCGa -3'
miRNA:   3'- -GugGCGGUGGuCgCaGUGGCuCA--AGC- -5'
23360 3' -57.4 NC_005259.1 + 52581 0.66 0.682515
Target:  5'- gACCgGCC-UgAGCGUCGCCGAGc--- -3'
miRNA:   3'- gUGG-CGGuGgUCGCAGUGGCUCaagc -5'
23360 3' -57.4 NC_005259.1 + 67990 0.66 0.682515
Target:  5'- cCACCGCCGCgAGCGUCgacuuGCCcuccugCGg -3'
miRNA:   3'- -GUGGCGGUGgUCGCAG-----UGGcucaa-GC- -5'
23360 3' -57.4 NC_005259.1 + 28630 0.66 0.682515
Target:  5'- gGCCaagGCCACCGGUGccgacacCGCCGAGgcCGc -3'
miRNA:   3'- gUGG---CGGUGGUCGCa------GUGGCUCaaGC- -5'
23360 3' -57.4 NC_005259.1 + 750 0.66 0.682515
Target:  5'- aCGCCGCCgguGCCuaccGCGUCcaccgcGCCGAGg-CGg -3'
miRNA:   3'- -GUGGCGG---UGGu---CGCAG------UGGCUCaaGC- -5'
23360 3' -57.4 NC_005259.1 + 63673 0.66 0.682515
Target:  5'- aCACCucgGgCACCGGCG-CGCCGGGg--- -3'
miRNA:   3'- -GUGG---CgGUGGUCGCaGUGGCUCaagc -5'
23360 3' -57.4 NC_005259.1 + 1840 0.66 0.671974
Target:  5'- uCGCCGCUGCCGcCGagGCCGAGa--- -3'
miRNA:   3'- -GUGGCGGUGGUcGCagUGGCUCaagc -5'
23360 3' -57.4 NC_005259.1 + 27888 0.66 0.671974
Target:  5'- gCACCacgauCCACCuGGgGUCGCCGAGacCGc -3'
miRNA:   3'- -GUGGc----GGUGG-UCgCAGUGGCUCaaGC- -5'
23360 3' -57.4 NC_005259.1 + 8575 0.66 0.655038
Target:  5'- gCACCGCCACCgcccacgcacgauccGGCGgC-CUGAGUUg- -3'
miRNA:   3'- -GUGGCGGUGG---------------UCGCaGuGGCUCAAgc -5'
23360 3' -57.4 NC_005259.1 + 57689 0.66 0.650795
Target:  5'- gACCGUgGCCAG-GUUGCCGGGcUUGc -3'
miRNA:   3'- gUGGCGgUGGUCgCAGUGGCUCaAGC- -5'
23360 3' -57.4 NC_005259.1 + 50751 0.66 0.650795
Target:  5'- aGCCGCCACgCGGUGUCGgaCGAcaccUCGg -3'
miRNA:   3'- gUGGCGGUG-GUCGCAGUg-GCUca--AGC- -5'
23360 3' -57.4 NC_005259.1 + 30799 0.67 0.633802
Target:  5'- gUACCGCCggaacACCugagucggguaguccGGCG-CGCCGAGgUCGg -3'
miRNA:   3'- -GUGGCGG-----UGG---------------UCGCaGUGGCUCaAGC- -5'
23360 3' -57.4 NC_005259.1 + 13120 0.67 0.629551
Target:  5'- gGCgGCUacgACCAGCG-CACgGuGUUCGg -3'
miRNA:   3'- gUGgCGG---UGGUCGCaGUGgCuCAAGC- -5'
23360 3' -57.4 NC_005259.1 + 38592 0.67 0.629551
Target:  5'- uGCUGCCcgauCCGGUGUCACUGAccUUGg -3'
miRNA:   3'- gUGGCGGu---GGUCGCAGUGGCUcaAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.