miRNA display CGI


Results 1 - 20 of 37 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23370 3' -50.3 NC_005259.1 + 67216 0.66 0.963793
Target:  5'- uCGGCGGGGucgauGCcgAC-CAcgGCGGUGUa -3'
miRNA:   3'- -GUUGCUCUu----CGa-UGcGUuaCGCCACG- -5'
23370 3' -50.3 NC_005259.1 + 59135 0.66 0.963793
Target:  5'- gAGCGucGAGCUcgGCA--GCGGUGCc -3'
miRNA:   3'- gUUGCucUUCGAugCGUuaCGCCACG- -5'
23370 3' -50.3 NC_005259.1 + 26014 0.66 0.963793
Target:  5'- gCAGCGGGAuGGC--CGCAA-GCGGguugGCc -3'
miRNA:   3'- -GUUGCUCU-UCGauGCGUUaCGCCa---CG- -5'
23370 3' -50.3 NC_005259.1 + 14061 0.66 0.963793
Target:  5'- gCGACGAGAcca---GCAcgGCGGUGg -3'
miRNA:   3'- -GUUGCUCUucgaugCGUuaCGCCACg -5'
23370 3' -50.3 NC_005259.1 + 49736 0.66 0.963793
Target:  5'- gCGGCGAG-AGCUGCucguCAGUGaCGGUcuuGCc -3'
miRNA:   3'- -GUUGCUCuUCGAUGc---GUUAC-GCCA---CG- -5'
23370 3' -50.3 NC_005259.1 + 66905 0.66 0.95998
Target:  5'- aCGGCGguAGAuccGGCaGCGC---GCGGUGCu -3'
miRNA:   3'- -GUUGC--UCU---UCGaUGCGuuaCGCCACG- -5'
23370 3' -50.3 NC_005259.1 + 19090 0.66 0.957564
Target:  5'- -uACGAcAAGCUGCGCGAacucaccggcgcugGUGuGUGCg -3'
miRNA:   3'- guUGCUcUUCGAUGCGUUa-------------CGC-CACG- -5'
23370 3' -50.3 NC_005259.1 + 14516 0.66 0.955899
Target:  5'- aCAcCGGcGAGC-ACGCGGUGCguuucGGUGCc -3'
miRNA:   3'- -GUuGCUcUUCGaUGCGUUACG-----CCACG- -5'
23370 3' -50.3 NC_005259.1 + 29005 0.66 0.955899
Target:  5'- -cACGAGAucg-GCG-AAUGCGGUGUc -3'
miRNA:   3'- guUGCUCUucgaUGCgUUACGCCACG- -5'
23370 3' -50.3 NC_005259.1 + 6551 0.66 0.955899
Target:  5'- gAGCGGuGAAGCUGUGCGcgGC-GUGUc -3'
miRNA:   3'- gUUGCU-CUUCGAUGCGUuaCGcCACG- -5'
23370 3' -50.3 NC_005259.1 + 50688 0.66 0.951544
Target:  5'- cCGACGAGgcGCUgcucgucgucGCGCuugaGCcgGGUGCu -3'
miRNA:   3'- -GUUGCUCuuCGA----------UGCGuua-CG--CCACG- -5'
23370 3' -50.3 NC_005259.1 + 30498 0.66 0.951544
Target:  5'- cCGGCGAGAccUUGCGCGAUGUGuUGa -3'
miRNA:   3'- -GUUGCUCUucGAUGCGUUACGCcACg -5'
23370 3' -50.3 NC_005259.1 + 54500 0.66 0.94691
Target:  5'- uCGGCGGGcauGGCg--GCGAUGUGGggugGCg -3'
miRNA:   3'- -GUUGCUCu--UCGaugCGUUACGCCa---CG- -5'
23370 3' -50.3 NC_005259.1 + 59886 0.67 0.936789
Target:  5'- aAACcGGggGCgACGCGAcuUGGUGCc -3'
miRNA:   3'- gUUGcUCuuCGaUGCGUUacGCCACG- -5'
23370 3' -50.3 NC_005259.1 + 62596 0.67 0.936253
Target:  5'- uCGAUGAGAGGCUGugugagcugacgcCGCAccGUGGccaGCa -3'
miRNA:   3'- -GUUGCUCUUCGAU-------------GCGUuaCGCCa--CG- -5'
23370 3' -50.3 NC_005259.1 + 37740 0.67 0.930732
Target:  5'- cCGACGAGcuGCUcgaugaccaGCGCGGuggccccUGCGG-GCa -3'
miRNA:   3'- -GUUGCUCuuCGA---------UGCGUU-------ACGCCaCG- -5'
23370 3' -50.3 NC_005259.1 + 60226 0.67 0.930732
Target:  5'- uCGGCGcuGAGCUcgcuggcACGCuugcGUGCgGGUGCa -3'
miRNA:   3'- -GUUGCucUUCGA-------UGCGu---UACG-CCACG- -5'
23370 3' -50.3 NC_005259.1 + 17184 0.67 0.925516
Target:  5'- gCGGCGcaGGAAGCcGCGCGugagGCGG-GUa -3'
miRNA:   3'- -GUUGC--UCUUCGaUGCGUua--CGCCaCG- -5'
23370 3' -50.3 NC_005259.1 + 5498 0.67 0.923725
Target:  5'- gAGCGAGGaucgAGCUACGCGcgccgcgcccgcaaGcUGUGGcUGCu -3'
miRNA:   3'- gUUGCUCU----UCGAUGCGU--------------U-ACGCC-ACG- -5'
23370 3' -50.3 NC_005259.1 + 16515 0.67 0.919444
Target:  5'- gAGCGAGgcGCUGCGagcgucGCucaagGGUGCg -3'
miRNA:   3'- gUUGCUCuuCGAUGCguua--CG-----CCACG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.