miRNA display CGI


Results 1 - 20 of 46 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23375 5' -54.4 NC_005259.1 + 49555 0.66 0.848726
Target:  5'- -gUGCCgGGCuguucGUCGGUCgUGGCCa- -3'
miRNA:   3'- ggACGGgUUGuu---CAGCCAG-ACUGGcg -5'
23375 5' -54.4 NC_005259.1 + 49672 0.66 0.840232
Target:  5'- gCCUGCUCGGCcugguAGUCGGcCUcgcGCuCGCu -3'
miRNA:   3'- -GGACGGGUUGu----UCAGCCaGAc--UG-GCG- -5'
23375 5' -54.4 NC_005259.1 + 30536 0.66 0.840232
Target:  5'- cCCUGCaugaucauggCCAcCGAG-CGGUUguugacgcccuUGGCCGCa -3'
miRNA:   3'- -GGACG----------GGUuGUUCaGCCAG-----------ACUGGCG- -5'
23375 5' -54.4 NC_005259.1 + 22620 0.66 0.822619
Target:  5'- aCCgccGCCCGAucaucuucgcCGcGUCGGUCgacGCCGCc -3'
miRNA:   3'- -GGa--CGGGUU----------GUuCAGCCAGac-UGGCG- -5'
23375 5' -54.4 NC_005259.1 + 28265 0.66 0.822619
Target:  5'- aUUGCCCGAaaccGUCGGcUCUG-CCGa -3'
miRNA:   3'- gGACGGGUUguu-CAGCC-AGACuGGCg -5'
23375 5' -54.4 NC_005259.1 + 18834 0.66 0.822619
Target:  5'- aUCUGCCCggUGAG--GGUCUcGCCGg -3'
miRNA:   3'- -GGACGGGuuGUUCagCCAGAcUGGCg -5'
23375 5' -54.4 NC_005259.1 + 40592 0.66 0.822619
Target:  5'- --cGCaCCAGCAcaucguuGUaGGUCUGGCUGCc -3'
miRNA:   3'- ggaCG-GGUUGUu------CAgCCAGACUGGCG- -5'
23375 5' -54.4 NC_005259.1 + 38992 0.66 0.813519
Target:  5'- cCCUGCCCAGCcucguuGAGcgCGGU--GACCa- -3'
miRNA:   3'- -GGACGGGUUG------UUCa-GCCAgaCUGGcg -5'
23375 5' -54.4 NC_005259.1 + 65723 0.66 0.813519
Target:  5'- --cGCCCAagGCGAGUUggGGUCgacccauugGAUCGCc -3'
miRNA:   3'- ggaCGGGU--UGUUCAG--CCAGa--------CUGGCG- -5'
23375 5' -54.4 NC_005259.1 + 51797 0.67 0.804235
Target:  5'- --cGCUCGGCGGGUCGGUCagcucaGGCaggGCg -3'
miRNA:   3'- ggaCGGGUUGUUCAGCCAGa-----CUGg--CG- -5'
23375 5' -54.4 NC_005259.1 + 43092 0.67 0.803297
Target:  5'- gCC-GCCgAACAgucccguGGUCaGGUCUGGCaGCa -3'
miRNA:   3'- -GGaCGGgUUGU-------UCAG-CCAGACUGgCG- -5'
23375 5' -54.4 NC_005259.1 + 20884 0.67 0.794779
Target:  5'- -gUGCCCAACAucGGuagcuacauguUCGGUCUGucucCCGa -3'
miRNA:   3'- ggACGGGUUGU--UC-----------AGCCAGACu---GGCg -5'
23375 5' -54.4 NC_005259.1 + 45096 0.67 0.794779
Target:  5'- gCgUGCCCGuguAGcCGGUCgGGCCGa -3'
miRNA:   3'- -GgACGGGUuguUCaGCCAGaCUGGCg -5'
23375 5' -54.4 NC_005259.1 + 46659 0.67 0.794779
Target:  5'- gCUGCgguugagguucUCGGCGAGcUCGGcCUGAgCCGCc -3'
miRNA:   3'- gGACG-----------GGUUGUUC-AGCCaGACU-GGCG- -5'
23375 5' -54.4 NC_005259.1 + 18693 0.67 0.785158
Target:  5'- gUCUGCUUgAGCAcGgCGGUCUGACCu- -3'
miRNA:   3'- -GGACGGG-UUGUuCaGCCAGACUGGcg -5'
23375 5' -54.4 NC_005259.1 + 64157 0.67 0.775384
Target:  5'- -aUGCCCuuGACGuAGUCGGcgacugUCUGugCGUc -3'
miRNA:   3'- ggACGGG--UUGU-UCAGCC------AGACugGCG- -5'
23375 5' -54.4 NC_005259.1 + 36431 0.67 0.775384
Target:  5'- gUCUGCgCAGCGucgccgaGGUC-GACCGCg -3'
miRNA:   3'- -GGACGgGUUGUucag---CCAGaCUGGCG- -5'
23375 5' -54.4 NC_005259.1 + 46850 0.68 0.755421
Target:  5'- gCUGCCCGAguccgcuGUCGGUCgagGcuugaaucgcGCCGCc -3'
miRNA:   3'- gGACGGGUUguu----CAGCCAGa--C----------UGGCG- -5'
23375 5' -54.4 NC_005259.1 + 49465 0.68 0.754409
Target:  5'- -aUGCCCAGCAGGUCGcccuugaacucaaGUUUG-UCGUa -3'
miRNA:   3'- ggACGGGUUGUUCAGC-------------CAGACuGGCG- -5'
23375 5' -54.4 NC_005259.1 + 35694 0.68 0.745252
Target:  5'- gCCgUGCCCGGCGAGg-GGUCgcUGAcgagguauCCGCc -3'
miRNA:   3'- -GG-ACGGGUUGUUCagCCAG--ACU--------GGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.