Results 21 - 40 of 75 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23376 | 5' | -60 | NC_005259.1 | + | 25920 | 0.66 | 0.563512 |
Target: 5'- aGCCGCcGCCGCCGguccgGugAGCGc--- -3' miRNA: 3'- gCGGCGaCGGCGGUg----CugUCGCaucc -5' |
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23376 | 5' | -60 | NC_005259.1 | + | 4279 | 0.66 | 0.563512 |
Target: 5'- gGCUGC-GCUGCCACGAgcacggacCGGCGg--- -3' miRNA: 3'- gCGGCGaCGGCGGUGCU--------GUCGCaucc -5' |
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23376 | 5' | -60 | NC_005259.1 | + | 50739 | 0.66 | 0.552252 |
Target: 5'- aG-CGCUuccucaaGCCGCCACG-CGGUGUcGGa -3' miRNA: 3'- gCgGCGA-------CGGCGGUGCuGUCGCAuCC- -5' |
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23376 | 5' | -60 | NC_005259.1 | + | 47967 | 0.67 | 0.473865 |
Target: 5'- cCGCCGC-GCCGCCcGCGaauaugccggGCAGCGc--- -3' miRNA: 3'- -GCGGCGaCGGCGG-UGC----------UGUCGCaucc -5' |
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23376 | 5' | -60 | NC_005259.1 | + | 13420 | 0.67 | 0.464329 |
Target: 5'- gGCCGgggucGCCGCCGgGGCcGCGcUAGGc -3' miRNA: 3'- gCGGCga---CGGCGGUgCUGuCGC-AUCC- -5' |
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23376 | 5' | -60 | NC_005259.1 | + | 15301 | 0.67 | 0.464329 |
Target: 5'- cCGCCGaccucGCCGCCcacggucuCGACGGCGguacuGGu -3' miRNA: 3'- -GCGGCga---CGGCGGu-------GCUGUCGCau---CC- -5' |
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23376 | 5' | -60 | NC_005259.1 | + | 44239 | 0.67 | 0.464329 |
Target: 5'- cCGCCGC-GCCGCCcgcgcGCGAgaaguCGGCGacaucgAGGc -3' miRNA: 3'- -GCGGCGaCGGCGG-----UGCU-----GUCGCa-----UCC- -5' |
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23376 | 5' | -60 | NC_005259.1 | + | 11447 | 0.67 | 0.484466 |
Target: 5'- cCGCuCGCUGCCGCCggugccuaucgucucGCagaucgaguagagaGACaaguagcugAGCGUAGGu -3' miRNA: 3'- -GCG-GCGACGGCGG---------------UG--------------CUG---------UCGCAUCC- -5' |
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23376 | 5' | -60 | NC_005259.1 | + | 27674 | 0.67 | 0.493225 |
Target: 5'- aGCCauuuGUUGCgCGaCCACGAC-GCGUAGc -3' miRNA: 3'- gCGG----CGACG-GC-GGUGCUGuCGCAUCc -5' |
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23376 | 5' | -60 | NC_005259.1 | + | 56887 | 0.67 | 0.493225 |
Target: 5'- aGCCGa--CCGCCAaucGCAGCGUGGc -3' miRNA: 3'- gCGGCgacGGCGGUgc-UGUCGCAUCc -5' |
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23376 | 5' | -60 | NC_005259.1 | + | 11542 | 0.67 | 0.50304 |
Target: 5'- aGCCGUUGCCGC-ACGucaGGCGg--- -3' miRNA: 3'- gCGGCGACGGCGgUGCug-UCGCaucc -5' |
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23376 | 5' | -60 | NC_005259.1 | + | 59381 | 0.67 | 0.50304 |
Target: 5'- aCGCCGCaccgUGCCuCCGCGcGCgAGCGUGa- -3' miRNA: 3'- -GCGGCG----ACGGcGGUGC-UG-UCGCAUcc -5' |
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23376 | 5' | -60 | NC_005259.1 | + | 34548 | 0.68 | 0.436341 |
Target: 5'- aGCCucaGCuUGCCGUCGgggcCGACGGCG-AGGu -3' miRNA: 3'- gCGG---CG-ACGGCGGU----GCUGUCGCaUCC- -5' |
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23376 | 5' | -60 | NC_005259.1 | + | 19954 | 0.68 | 0.436341 |
Target: 5'- gCGuCCGCaacgGCgGCU-CGGCGGUGUGGGu -3' miRNA: 3'- -GC-GGCGa---CGgCGGuGCUGUCGCAUCC- -5' |
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23376 | 5' | -60 | NC_005259.1 | + | 47569 | 0.68 | 0.436341 |
Target: 5'- uCGCgCGCUGCUGUCccuCGGCGGUGUu-- -3' miRNA: 3'- -GCG-GCGACGGCGGu--GCUGUCGCAucc -5' |
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23376 | 5' | -60 | NC_005259.1 | + | 35202 | 0.68 | 0.436341 |
Target: 5'- -aCCG-UGCCGCCugaGGCGGCG-AGGa -3' miRNA: 3'- gcGGCgACGGCGGug-CUGUCGCaUCC- -5' |
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23376 | 5' | -60 | NC_005259.1 | + | 28064 | 0.68 | 0.436341 |
Target: 5'- gCGaCCcCUGCCGCCAC-ACGGUG-GGGu -3' miRNA: 3'- -GC-GGcGACGGCGGUGcUGUCGCaUCC- -5' |
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23376 | 5' | -60 | NC_005259.1 | + | 19557 | 0.68 | 0.436341 |
Target: 5'- uGcCCGCaGCCGUCGgGACAGCGc--- -3' miRNA: 3'- gC-GGCGaCGGCGGUgCUGUCGCaucc -5' |
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23376 | 5' | -60 | NC_005259.1 | + | 45401 | 0.68 | 0.430861 |
Target: 5'- uCGCCGCcgagcgcgcugaugGCCGCCGCcGCuGCcucGUAGGc -3' miRNA: 3'- -GCGGCGa-------------CGGCGGUGcUGuCG---CAUCC- -5' |
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23376 | 5' | -60 | NC_005259.1 | + | 42494 | 0.68 | 0.454894 |
Target: 5'- aGCCGUgacCCGUC-CGGCGGUGUGGc -3' miRNA: 3'- gCGGCGac-GGCGGuGCUGUCGCAUCc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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