miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23376 5' -60 NC_005259.1 + 45345 0.72 0.245788
Target:  5'- gCGCCGCcuggGCCGCCGCG-UAGuCGacgGGGu -3'
miRNA:   3'- -GCGGCGa---CGGCGGUGCuGUC-GCa--UCC- -5'
23376 5' -60 NC_005259.1 + 36775 0.66 0.573801
Target:  5'- gGCgCGUUGCCGCCGuccUGACcgcucGCGUcGGc -3'
miRNA:   3'- gCG-GCGACGGCGGU---GCUGu----CGCAuCC- -5'
23376 5' -60 NC_005259.1 + 60298 0.7 0.312443
Target:  5'- uCGUCGgUGCgGCCACGgACGGCGaaaccGGGc -3'
miRNA:   3'- -GCGGCgACGgCGGUGC-UGUCGCa----UCC- -5'
23376 5' -60 NC_005259.1 + 45644 0.7 0.312443
Target:  5'- gCGCCGgUGCCGCCGUGaACAccgccguccGCGUAGu -3'
miRNA:   3'- -GCGGCgACGGCGGUGC-UGU---------CGCAUCc -5'
23376 5' -60 NC_005259.1 + 41706 0.7 0.312443
Target:  5'- gGCaUGCaGCCGCCGCauaccGGCGGCGgggAGGa -3'
miRNA:   3'- gCG-GCGaCGGCGGUG-----CUGUCGCa--UCC- -5'
23376 5' -60 NC_005259.1 + 8841 0.71 0.298088
Target:  5'- gCGCUGC-GCCGaCCACcACAGCGUGc- -3'
miRNA:   3'- -GCGGCGaCGGC-GGUGcUGUCGCAUcc -5'
23376 5' -60 NC_005259.1 + 18852 0.71 0.291105
Target:  5'- uCGCCGgUGCCGUgcaACGguuGCGcGCGUGGGa -3'
miRNA:   3'- -GCGGCgACGGCGg--UGC---UGU-CGCAUCC- -5'
23376 5' -60 NC_005259.1 + 27276 0.71 0.28425
Target:  5'- aCGCCGCcuugaGCCGCCGCuGCAcGCGccGGa -3'
miRNA:   3'- -GCGGCGa----CGGCGGUGcUGU-CGCauCC- -5'
23376 5' -60 NC_005259.1 + 59299 0.71 0.277523
Target:  5'- cCuaCGCUGUCGUgGCGGCAGCGgcGa -3'
miRNA:   3'- -GcgGCGACGGCGgUGCUGUCGCauCc -5'
23376 5' -60 NC_005259.1 + 28221 0.71 0.270925
Target:  5'- gGUCG-UGCCGCCAcCGuCGGCGgcGGg -3'
miRNA:   3'- gCGGCgACGGCGGU-GCuGUCGCauCC- -5'
23376 5' -60 NC_005259.1 + 28296 0.72 0.264453
Target:  5'- gGCCacGgUGCCGCCcuGCG-CAGCGUAGa -3'
miRNA:   3'- gCGG--CgACGGCGG--UGCuGUCGCAUCc -5'
23376 5' -60 NC_005259.1 + 67207 0.86 0.024567
Target:  5'- uCGCCGCugucggcggggucgaUGCCGaCCACGGCGGUGUAGGg -3'
miRNA:   3'- -GCGGCG---------------ACGGC-GGUGCUGUCGCAUCC- -5'
23376 5' -60 NC_005259.1 + 32549 0.72 0.239814
Target:  5'- uGCUGUUgGCCGCCcCGGCgAGCGcGGGg -3'
miRNA:   3'- gCGGCGA-CGGCGGuGCUG-UCGCaUCC- -5'
23376 5' -60 NC_005259.1 + 38726 0.73 0.22823
Target:  5'- -aCCGCUGCCGCCGuacCGGCGGUGg--- -3'
miRNA:   3'- gcGGCGACGGCGGU---GCUGUCGCaucc -5'
23376 5' -60 NC_005259.1 + 26947 0.73 0.204923
Target:  5'- aCGCCGCUGCuggaacgugcgcagCGCCGugccgaacuCGGCGGUGUAGa -3'
miRNA:   3'- -GCGGCGACG--------------GCGGU---------GCUGUCGCAUCc -5'
23376 5' -60 NC_005259.1 + 37665 0.74 0.17723
Target:  5'- cCGCCGgUGCCGCCACGguuGGUGUAu- -3'
miRNA:   3'- -GCGGCgACGGCGGUGCug-UCGCAUcc -5'
23376 5' -60 NC_005259.1 + 38951 0.74 0.172728
Target:  5'- uGCCGCUGCCGCCgagagccugcACGAUGGCa---- -3'
miRNA:   3'- gCGGCGACGGCGG----------UGCUGUCGcaucc -5'
23376 5' -60 NC_005259.1 + 26280 0.75 0.159831
Target:  5'- uCGCCGgUGCCGCCcuCGACGG-GUAcGGg -3'
miRNA:   3'- -GCGGCgACGGCGGu-GCUGUCgCAU-CC- -5'
23376 5' -60 NC_005259.1 + 35643 0.75 0.151721
Target:  5'- cCGCCGCUGCCGCUgGCGAgGGUGg--- -3'
miRNA:   3'- -GCGGCGACGGCGG-UGCUgUCGCaucc -5'
23376 5' -60 NC_005259.1 + 49243 0.77 0.122902
Target:  5'- uCGaCCGCUGCCGUCACGAUuGCGUu-- -3'
miRNA:   3'- -GC-GGCGACGGCGGUGCUGuCGCAucc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.