miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23377 5' -59.5 NC_005259.1 + 36671 0.66 0.59363
Target:  5'- cGCCGCCGccGCCggGGUCUUGaccguccucGCCCGc -3'
miRNA:   3'- cCGGUGGC--UGGa-CUAGAGCga-------CGGGC- -5'
23377 5' -59.5 NC_005259.1 + 33623 0.66 0.59363
Target:  5'- cGGCCACCGAaaCUGuugcgaaUCGC-GCUCGg -3'
miRNA:   3'- -CCGGUGGCUg-GACuag----AGCGaCGGGC- -5'
23377 5' -59.5 NC_005259.1 + 38682 0.66 0.589463
Target:  5'- uGGCCGCCGggucgagguuggccACCUGAgaCUguagguugaccacCGCUGCCg- -3'
miRNA:   3'- -CCGGUGGC--------------UGGACUa-GA-------------GCGACGGgc -5'
23377 5' -59.5 NC_005259.1 + 7921 0.66 0.583222
Target:  5'- uGCCGCC--CUUGGUCUCGUggGCCUu -3'
miRNA:   3'- cCGGUGGcuGGACUAGAGCGa-CGGGc -5'
23377 5' -59.5 NC_005259.1 + 58589 0.66 0.583222
Target:  5'- cGGCUGCCgGGCCgGAUCUUuucgaGC-GCCUGg -3'
miRNA:   3'- -CCGGUGG-CUGGaCUAGAG-----CGaCGGGC- -5'
23377 5' -59.5 NC_005259.1 + 66638 0.66 0.583222
Target:  5'- uGGCCACCGcUCgGA--UUGCUGCCgGu -3'
miRNA:   3'- -CCGGUGGCuGGaCUagAGCGACGGgC- -5'
23377 5' -59.5 NC_005259.1 + 22612 0.66 0.583222
Target:  5'- cGCCGCCGACCgccgcccGAUCaucuUCGCcGCgUCGg -3'
miRNA:   3'- cCGGUGGCUGGa------CUAG----AGCGaCG-GGC- -5'
23377 5' -59.5 NC_005259.1 + 29875 0.66 0.576995
Target:  5'- uGCCACCGcCCgaugucgaGGUCggcaagcacaaggggUgGCUGCCCGa -3'
miRNA:   3'- cCGGUGGCuGGa-------CUAG---------------AgCGACGGGC- -5'
23377 5' -59.5 NC_005259.1 + 66858 0.66 0.572851
Target:  5'- gGGCCACCGAUC-GGcCUUGUUcGCaCCGc -3'
miRNA:   3'- -CCGGUGGCUGGaCUaGAGCGA-CG-GGC- -5'
23377 5' -59.5 NC_005259.1 + 3741 0.66 0.572851
Target:  5'- cGGUCGCaCGACCUaucaGGUCgacaGC-GCCCGc -3'
miRNA:   3'- -CCGGUG-GCUGGA----CUAGag--CGaCGGGC- -5'
23377 5' -59.5 NC_005259.1 + 65794 0.66 0.572851
Target:  5'- uGGCC-UCGACgcgCUGGUCgaaaCGCUGgCCGu -3'
miRNA:   3'- -CCGGuGGCUG---GACUAGa---GCGACgGGC- -5'
23377 5' -59.5 NC_005259.1 + 51441 0.66 0.572851
Target:  5'- gGGCCACgGgGCCUcgcgccgauaGAgCUUGUUGCCCu -3'
miRNA:   3'- -CCGGUGgC-UGGA----------CUaGAGCGACGGGc -5'
23377 5' -59.5 NC_005259.1 + 28354 0.66 0.572851
Target:  5'- aGGCCACgGugCUG-----GCUGCCCc -3'
miRNA:   3'- -CCGGUGgCugGACuagagCGACGGGc -5'
23377 5' -59.5 NC_005259.1 + 42663 0.66 0.572851
Target:  5'- cGGCCACgCGGCUgcuguuggcGAUCUCGac-CCCGu -3'
miRNA:   3'- -CCGGUG-GCUGGa--------CUAGAGCgacGGGC- -5'
23377 5' -59.5 NC_005259.1 + 66289 0.66 0.562524
Target:  5'- cGCCACCauccACuCUGcgCgcaugUGCUGCCCGc -3'
miRNA:   3'- cCGGUGGc---UG-GACuaGa----GCGACGGGC- -5'
23377 5' -59.5 NC_005259.1 + 1888 0.66 0.562524
Target:  5'- aGGCCGCCGA---GAUCgcgcgaGCUGCCg- -3'
miRNA:   3'- -CCGGUGGCUggaCUAGag----CGACGGgc -5'
23377 5' -59.5 NC_005259.1 + 46818 0.66 0.562524
Target:  5'- -aCCACCGgccACCUGAgugagCgccccggcgaGCUGCCCGa -3'
miRNA:   3'- ccGGUGGC---UGGACUa----Gag--------CGACGGGC- -5'
23377 5' -59.5 NC_005259.1 + 9754 0.66 0.559436
Target:  5'- -uCCACCacagcgugauacgaGACCUGG-CUCGacuuCUGCCCGg -3'
miRNA:   3'- ccGGUGG--------------CUGGACUaGAGC----GACGGGC- -5'
23377 5' -59.5 NC_005259.1 + 23006 0.66 0.55738
Target:  5'- aGGUCACCGAggacggcucggucauCgaGAUCgaacccgacgacgaGCUGCCCGg -3'
miRNA:   3'- -CCGGUGGCU---------------GgaCUAGag------------CGACGGGC- -5'
23377 5' -59.5 NC_005259.1 + 15425 0.66 0.552248
Target:  5'- uGCCACCaaGGCC-GAUCUCGaguauCUGgCCGa -3'
miRNA:   3'- cCGGUGG--CUGGaCUAGAGC-----GACgGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.