miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23386 3' -57.8 NC_005259.1 + 35881 0.66 0.645687
Target:  5'- -aGCcGCCGCCGAGGCAgaccacGGCgaGCCa-- -3'
miRNA:   3'- ucUGaCGGUGGCUCCGU------UCG--UGGagc -5'
23386 3' -57.8 NC_005259.1 + 37219 0.66 0.645687
Target:  5'- -cGCcGCCGCCGGGGCGcuGGC-CCgugcCGg -3'
miRNA:   3'- ucUGaCGGUGGCUCCGU--UCGuGGa---GC- -5'
23386 3' -57.8 NC_005259.1 + 68681 0.66 0.63496
Target:  5'- gGGAUgGCCuucucgaugAUCGAGGCGggcAGCGCgUCGg -3'
miRNA:   3'- -UCUGaCGG---------UGGCUCCGU---UCGUGgAGC- -5'
23386 3' -57.8 NC_005259.1 + 57927 0.66 0.63496
Target:  5'- cGACcagUGCCAgCGAGuuGAGCACCg-- -3'
miRNA:   3'- uCUG---ACGGUgGCUCcgUUCGUGGagc -5'
23386 3' -57.8 NC_005259.1 + 12070 0.66 0.63496
Target:  5'- cGGCaGaCACCGAGaUggGCACCUUGg -3'
miRNA:   3'- uCUGaCgGUGGCUCcGuuCGUGGAGC- -5'
23386 3' -57.8 NC_005259.1 + 49405 0.66 0.63496
Target:  5'- gAGACguacuugcucgaUGCCAgCGAgaaaccGGCGAGCGCCg-- -3'
miRNA:   3'- -UCUG------------ACGGUgGCU------CCGUUCGUGGagc -5'
23386 3' -57.8 NC_005259.1 + 8979 0.66 0.63496
Target:  5'- gGGACguaggUGCCAgCGGcgacGGCAGcCGCCUCGu -3'
miRNA:   3'- -UCUG-----ACGGUgGCU----CCGUUcGUGGAGC- -5'
23386 3' -57.8 NC_005259.1 + 6950 0.66 0.63496
Target:  5'- -aGCUcGCCGCCGAcGGCAuccaCACcCUCGa -3'
miRNA:   3'- ucUGA-CGGUGGCU-CCGUuc--GUG-GAGC- -5'
23386 3' -57.8 NC_005259.1 + 61229 0.66 0.632814
Target:  5'- cGGugUGCgCACCGAGaacucgaucucggguGCGAGCAugcgaccgucgcuggUCUCGa -3'
miRNA:   3'- -UCugACG-GUGGCUC---------------CGUUCGU---------------GGAGC- -5'
23386 3' -57.8 NC_005259.1 + 51737 0.66 0.621012
Target:  5'- uGAUgGCCACCGccacgcucucggcaGcguugcgcucGGCGAGCGCCUUGa -3'
miRNA:   3'- uCUGaCGGUGGC--------------U----------CCGUUCGUGGAGC- -5'
23386 3' -57.8 NC_005259.1 + 47466 0.66 0.613507
Target:  5'- cGGuCaGCCACCGAGGUGAuCGCgUCa -3'
miRNA:   3'- -UCuGaCGGUGGCUCCGUUcGUGgAGc -5'
23386 3' -57.8 NC_005259.1 + 45525 0.66 0.612435
Target:  5'- cGGugUugGCCGCCGuGGCugcgagcGGGUugCUCGc -3'
miRNA:   3'- -UCugA--CGGUGGCuCCG-------UUCGugGAGC- -5'
23386 3' -57.8 NC_005259.1 + 34553 0.66 0.602799
Target:  5'- cAGcUUGCCgucgggGCCGAcGGCGAGguUCUCGg -3'
miRNA:   3'- -UCuGACGG------UGGCU-CCGUUCguGGAGC- -5'
23386 3' -57.8 NC_005259.1 + 29872 0.66 0.593182
Target:  5'- -aACUGCCACCGcccgaugucgaggucGGCAAGCACa--- -3'
miRNA:   3'- ucUGACGGUGGCu--------------CCGUUCGUGgagc -5'
23386 3' -57.8 NC_005259.1 + 8352 0.66 0.592115
Target:  5'- -cGCUGCUGCCGGuaucgcucGGCG-GCgGCCUCGg -3'
miRNA:   3'- ucUGACGGUGGCU--------CCGUuCG-UGGAGC- -5'
23386 3' -57.8 NC_005259.1 + 43025 0.67 0.581463
Target:  5'- cGGCgaUGCCGCCGA-GCAGGcCGCCgagcagCGa -3'
miRNA:   3'- uCUG--ACGGUGGCUcCGUUC-GUGGa-----GC- -5'
23386 3' -57.8 NC_005259.1 + 15147 0.67 0.581463
Target:  5'- gGGGCcaccucgGUgGCCGAGGCcgAGGCcauCCUCGa -3'
miRNA:   3'- -UCUGa------CGgUGGCUCCG--UUCGu--GGAGC- -5'
23386 3' -57.8 NC_005259.1 + 5707 0.67 0.581463
Target:  5'- ---gUGCCGCCaAGGCcAGCGCCggaCGg -3'
miRNA:   3'- ucugACGGUGGcUCCGuUCGUGGa--GC- -5'
23386 3' -57.8 NC_005259.1 + 45727 0.67 0.581463
Target:  5'- cGcCUGCgcacCACCGAGGCcgcGCaccGCCUCGg -3'
miRNA:   3'- uCuGACG----GUGGCUCCGuu-CG---UGGAGC- -5'
23386 3' -57.8 NC_005259.1 + 37177 0.67 0.570851
Target:  5'- cGAC-GCCGCgCGAGGaCGAGCugCg-- -3'
miRNA:   3'- uCUGaCGGUG-GCUCC-GUUCGugGagc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.