miRNA display CGI


Results 21 - 40 of 118 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23386 5' -59 NC_005259.1 + 54735 0.69 0.423185
Target:  5'- aGCCGAGGCuGCCGaC-AGCGAucaggccGCCGAc -3'
miRNA:   3'- -CGGCUCUGcUGGCgGuUCGCU-------CGGCU- -5'
23386 5' -59 NC_005259.1 + 52629 0.66 0.570967
Target:  5'- cGUCGAGcugcguCGGCUGUgGGGCGAGgUGAg -3'
miRNA:   3'- -CGGCUCu-----GCUGGCGgUUCGCUCgGCU- -5'
23386 5' -59 NC_005259.1 + 51958 0.71 0.331876
Target:  5'- cGCCGAGAgaggaagccaUGACCGCCAGaaucaucacCGAcGCCGAu -3'
miRNA:   3'- -CGGCUCU----------GCUGGCGGUUc--------GCU-CGGCU- -5'
23386 5' -59 NC_005259.1 + 51413 0.68 0.490164
Target:  5'- cGCCGAGG-GGCCGgUugaggucuuGGGCGGGCCa- -3'
miRNA:   3'- -CGGCUCUgCUGGCgG---------UUCGCUCGGcu -5'
23386 5' -59 NC_005259.1 + 51138 0.68 0.467896
Target:  5'- cGUCGGGGCGGCCaugaGCgCGuucggguugaccguGGCGAGCCa- -3'
miRNA:   3'- -CGGCUCUGCUGG----CG-GU--------------UCGCUCGGcu -5'
23386 5' -59 NC_005259.1 + 50392 0.69 0.424091
Target:  5'- -aCGuGucGCGGCuCGCCGAGCGcGCCGGu -3'
miRNA:   3'- cgGCuC--UGCUG-GCGGUUCGCuCGGCU- -5'
23386 5' -59 NC_005259.1 + 48636 0.68 0.470771
Target:  5'- cGCCGAGACgGGCUGCCAGauCGucGCCa- -3'
miRNA:   3'- -CGGCUCUG-CUGGCGGUUc-GCu-CGGcu -5'
23386 5' -59 NC_005259.1 + 48412 0.66 0.570967
Target:  5'- cGUCGAGucaccGCGACCGCCAccacCGAGgCgCGAg -3'
miRNA:   3'- -CGGCUC-----UGCUGGCGGUuc--GCUC-G-GCU- -5'
23386 5' -59 NC_005259.1 + 47928 0.69 0.406208
Target:  5'- cGCCGAGGCccuGGaaGCCGaugacGGCGGuGCCGAu -3'
miRNA:   3'- -CGGCUCUG---CUggCGGU-----UCGCU-CGGCU- -5'
23386 5' -59 NC_005259.1 + 47071 0.68 0.48042
Target:  5'- -gCGAGGCGAgCGCCGAGaCGAugggcaGCaCGAu -3'
miRNA:   3'- cgGCUCUGCUgGCGGUUC-GCU------CG-GCU- -5'
23386 5' -59 NC_005259.1 + 47017 0.76 0.166015
Target:  5'- aGCCGAccACGACCGCCuccAGCaGGCCGGg -3'
miRNA:   3'- -CGGCUc-UGCUGGCGGu--UCGcUCGGCU- -5'
23386 5' -59 NC_005259.1 + 46993 0.67 0.550368
Target:  5'- gGCCGAGG-GugCGCCAcGCGAGg--- -3'
miRNA:   3'- -CGGCUCUgCugGCGGUuCGCUCggcu -5'
23386 5' -59 NC_005259.1 + 46909 0.7 0.355503
Target:  5'- cGCCGAGcaguccGCGugcGCCGCCGAGCuuGCCc- -3'
miRNA:   3'- -CGGCUC------UGC---UGGCGGUUCGcuCGGcu -5'
23386 5' -59 NC_005259.1 + 46772 0.67 0.530004
Target:  5'- cGCCGAcagccGCGcCCGCCGGGCcgaacaccGAGCCu- -3'
miRNA:   3'- -CGGCUc----UGCuGGCGGUUCG--------CUCGGcu -5'
23386 5' -59 NC_005259.1 + 45522 0.72 0.274611
Target:  5'- cGCCGGuGuuGGCCGCCGuggcuGCGAGCgGGu -3'
miRNA:   3'- -CGGCU-CugCUGGCGGUu----CGCUCGgCU- -5'
23386 5' -59 NC_005259.1 + 45394 0.72 0.281314
Target:  5'- cUCGGGGuCG-CCGCCGAGCGcGCUGAu -3'
miRNA:   3'- cGGCUCU-GCuGGCGGUUCGCuCGGCU- -5'
23386 5' -59 NC_005259.1 + 45315 0.76 0.161749
Target:  5'- cGCCGAGGCcGCCGCCGAacuGCGuGGCCu- -3'
miRNA:   3'- -CGGCUCUGcUGGCGGUU---CGC-UCGGcu -5'
23386 5' -59 NC_005259.1 + 44995 0.74 0.198789
Target:  5'- uGCCGAGGC-ACCGCCGAccGCcgGGGCCGc -3'
miRNA:   3'- -CGGCUCUGcUGGCGGUU--CG--CUCGGCu -5'
23386 5' -59 NC_005259.1 + 44551 0.67 0.509921
Target:  5'- uGCCGAGAcCGGCagGC--AGCGcGCCGAc -3'
miRNA:   3'- -CGGCUCU-GCUGg-CGguUCGCuCGGCU- -5'
23386 5' -59 NC_005259.1 + 44462 0.67 0.560641
Target:  5'- aCCGGGGauGCCGCCGcccuGGCcGGGCCa- -3'
miRNA:   3'- cGGCUCUgcUGGCGGU----UCG-CUCGGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.