Results 21 - 29 of 29 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. |
strand
|
Start Position | R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 23388 | 3' | -64 | NC_005259.1 | + | 5422 | 0.69 | 0.210174 |
|
Target: 5'- -gCC-GCCaCGUCGAGGucugcgcccGCUGCCGCCg -3' miRNA: 3'- uaGGuCGG-GCAGUUCC---------CGGCGGCGGa -5' |
|||||||
| 23388 | 3' | -64 | NC_005259.1 | + | 36633 | 0.69 | 0.213882 |
|
Target: 5'- -gCC-GCCCG-CAAGGcccgcgaucagcgaGCCGCCGCCc -3' miRNA: 3'- uaGGuCGGGCaGUUCC--------------CGGCGGCGGa -5' |
|||||||
| 23388 | 3' | -64 | NC_005259.1 | + | 37234 | 0.68 | 0.220918 |
|
Target: 5'- -gCUGGCCCGUgCcGGauuGGCUGCCGCCg -3' miRNA: 3'- uaGGUCGGGCA-GuUC---CCGGCGGCGGa -5' |
|||||||
| 23388 | 3' | -64 | NC_005259.1 | + | 60137 | 0.68 | 0.232127 |
|
Target: 5'- cGUCCuGCgCGgccuuGGCCGCCGCCUc -3' miRNA: 3'- -UAGGuCGgGCaguucCCGGCGGCGGA- -5' |
|||||||
| 23388 | 3' | -64 | NC_005259.1 | + | 45375 | 0.68 | 0.237909 |
|
Target: 5'- gGUUuuGCCCGagGaauuucucGGGGUCGCCGCCg -3' miRNA: 3'- -UAGguCGGGCagU--------UCCCGGCGGCGGa -5' |
|||||||
| 23388 | 3' | -64 | NC_005259.1 | + | 43827 | 0.67 | 0.25598 |
|
Target: 5'- -aCC-GCCgGaCAcAGGGCCGCCGCUc -3' miRNA: 3'- uaGGuCGGgCaGU-UCCCGGCGGCGGa -5' |
|||||||
| 23388 | 3' | -64 | NC_005259.1 | + | 21040 | 0.67 | 0.25598 |
|
Target: 5'- -aCCGGCgCGcguUCAA-GGUCGCCGCCa -3' miRNA: 3'- uaGGUCGgGC---AGUUcCCGGCGGCGGa -5' |
|||||||
| 23388 | 3' | -64 | NC_005259.1 | + | 25055 | 0.67 | 0.261616 |
|
Target: 5'- --gUAGCCCGUuuucaggCAAGGGUggCGCUGCCa -3' miRNA: 3'- uagGUCGGGCA-------GUUCCCG--GCGGCGGa -5' |
|||||||
| 23388 | 3' | -64 | NC_005259.1 | + | 39915 | 0.66 | 0.339548 |
|
Target: 5'- -cUCGaUCCGUCGAGGGCCG-CGUCg -3' miRNA: 3'- uaGGUcGGGCAGUUCCCGGCgGCGGa -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home