miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23391 5' -57.4 NC_005259.1 + 58810 0.66 0.736906
Target:  5'- cUCGg---CGGGcUCGCGCUGCUCG-GCa -3'
miRNA:   3'- -GGCaugaGCCU-AGCGUGGCGGGCuCG- -5'
23391 5' -57.4 NC_005259.1 + 13471 0.66 0.736906
Target:  5'- -gGUGCUCac--CGCGCUGCCCGAc- -3'
miRNA:   3'- ggCAUGAGccuaGCGUGGCGGGCUcg -5'
23391 5' -57.4 NC_005259.1 + 68282 0.66 0.735905
Target:  5'- aCCGUcCUCgccccauacaucgGGAUCGgGCgCGUCCG-GCg -3'
miRNA:   3'- -GGCAuGAG-------------CCUAGCgUG-GCGGGCuCG- -5'
23391 5' -57.4 NC_005259.1 + 8861 0.66 0.735905
Target:  5'- gCGUGCcCGc--CGCcugccgcacccacGCCGCCUGAGCg -3'
miRNA:   3'- gGCAUGaGCcuaGCG-------------UGGCGGGCUCG- -5'
23391 5' -57.4 NC_005259.1 + 26408 0.66 0.730881
Target:  5'- gCCGgGCgcggCGGugccgccguagaaCGCACCGC-CGAGCg -3'
miRNA:   3'- -GGCaUGa---GCCua-----------GCGUGGCGgGCUCG- -5'
23391 5' -57.4 NC_005259.1 + 19849 0.66 0.726846
Target:  5'- gCCGcGCUCGGuguggcgcUCGCGCC-CgCCGGGa -3'
miRNA:   3'- -GGCaUGAGCCu-------AGCGUGGcG-GGCUCg -5'
23391 5' -57.4 NC_005259.1 + 31718 0.66 0.726846
Target:  5'- gCCGgucuuCUCuGAggugacCGCGCCuGCCgCGAGCg -3'
miRNA:   3'- -GGCau---GAGcCUa-----GCGUGG-CGG-GCUCG- -5'
23391 5' -57.4 NC_005259.1 + 9380 0.66 0.7167
Target:  5'- gCGaGCUCGGAgagcaaCGCACgcgCGCCCcGGUa -3'
miRNA:   3'- gGCaUGAGCCUa-----GCGUG---GCGGGcUCG- -5'
23391 5' -57.4 NC_005259.1 + 27355 0.66 0.706479
Target:  5'- gCCGUACU--GAUCGgGCUugguGCCCG-GCa -3'
miRNA:   3'- -GGCAUGAgcCUAGCgUGG----CGGGCuCG- -5'
23391 5' -57.4 NC_005259.1 + 40152 0.66 0.696191
Target:  5'- uCgGUugUCGG--UGC-CCGCCCcGGCa -3'
miRNA:   3'- -GgCAugAGCCuaGCGuGGCGGGcUCG- -5'
23391 5' -57.4 NC_005259.1 + 14725 0.66 0.695159
Target:  5'- gCCGcGCUCGucgccgaGAUguaCGCGCUGgCCGGGCc -3'
miRNA:   3'- -GGCaUGAGC-------CUA---GCGUGGCgGGCUCG- -5'
23391 5' -57.4 NC_005259.1 + 68777 0.66 0.685847
Target:  5'- gUGUACUUGagcaGGUCGUA-CGCCgGGGCg -3'
miRNA:   3'- gGCAUGAGC----CUAGCGUgGCGGgCUCG- -5'
23391 5' -57.4 NC_005259.1 + 52923 0.67 0.674415
Target:  5'- gCCG-ACUCGauggccuGGUCGCucaaCGCCCGuaAGCa -3'
miRNA:   3'- -GGCaUGAGC-------CUAGCGug--GCGGGC--UCG- -5'
23391 5' -57.4 NC_005259.1 + 29847 0.67 0.663984
Target:  5'- uCCGUucGCUCGcuGUCGggcaucgaacugcCACCGCCCGAuGUc -3'
miRNA:   3'- -GGCA--UGAGCc-UAGC-------------GUGGCGGGCU-CG- -5'
23391 5' -57.4 NC_005259.1 + 67962 0.67 0.663984
Target:  5'- uUGUGCUguagcgcgcgcagCGGcGUgGcCACCGCCgCGAGCg -3'
miRNA:   3'- gGCAUGA-------------GCC-UAgC-GUGGCGG-GCUCG- -5'
23391 5' -57.4 NC_005259.1 + 41381 0.67 0.658758
Target:  5'- gUCGaGCUUGGccgguacccauggCGCGCCGCUCGGGg -3'
miRNA:   3'- -GGCaUGAGCCua-----------GCGUGGCGGGCUCg -5'
23391 5' -57.4 NC_005259.1 + 3267 0.67 0.657712
Target:  5'- uCC-UGCUCGGGUgguuuccCGuCGCCGCCucgccggucccucggCGAGCg -3'
miRNA:   3'- -GGcAUGAGCCUA-------GC-GUGGCGG---------------GCUCG- -5'
23391 5' -57.4 NC_005259.1 + 60532 0.67 0.654573
Target:  5'- gCCGgGC-CGGGaCGCAgCCGCUCGucGGCa -3'
miRNA:   3'- -GGCaUGaGCCUaGCGU-GGCGGGC--UCG- -5'
23391 5' -57.4 NC_005259.1 + 36968 0.67 0.64829
Target:  5'- aCCGc-CUCGGcccgcaccgccgaacGUCGCACCguucuuGCCCGcGCg -3'
miRNA:   3'- -GGCauGAGCC---------------UAGCGUGG------CGGGCuCG- -5'
23391 5' -57.4 NC_005259.1 + 61922 0.67 0.644098
Target:  5'- gUCGUcggcaGCUCGGucucUCGCGCgggUGCCgGGGCc -3'
miRNA:   3'- -GGCA-----UGAGCCu---AGCGUG---GCGGgCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.