miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23407 3' -54.1 NC_005259.1 + 24050 0.66 0.859869
Target:  5'- -aACGUCGUCGGcgcGGUGCUCAaucucgugcaccGCGAGa -3'
miRNA:   3'- gcUGCGGUAGUU---CCGCGAGU------------UGCUCc -5'
23407 3' -54.1 NC_005259.1 + 18803 0.66 0.858243
Target:  5'- gGACGCCGcacccucaagacCAAGGUGCUguaucugccCggUGAGGg -3'
miRNA:   3'- gCUGCGGUa-----------GUUCCGCGA---------GuuGCUCC- -5'
23407 3' -54.1 NC_005259.1 + 20474 0.66 0.857427
Target:  5'- uGAcCGCCGUCGAccucgacaccgcccGGCaGCUCAucgGCGAcGGu -3'
miRNA:   3'- gCU-GCGGUAGUU--------------CCG-CGAGU---UGCU-CC- -5'
23407 3' -54.1 NC_005259.1 + 20433 0.66 0.851648
Target:  5'- cCGACGCCA-CA--GUGCUCcacGACGAGc -3'
miRNA:   3'- -GCUGCGGUaGUucCGCGAG---UUGCUCc -5'
23407 3' -54.1 NC_005259.1 + 9353 0.66 0.851648
Target:  5'- cCGAUGaCCGUCuguAGGuCGUacUCGGCGAGc -3'
miRNA:   3'- -GCUGC-GGUAGu--UCC-GCG--AGUUGCUCc -5'
23407 3' -54.1 NC_005259.1 + 26876 0.66 0.843205
Target:  5'- gGugGCCcaGUCGAgcacaccaucGGUGUUCAucACGGGGc -3'
miRNA:   3'- gCugCGG--UAGUU----------CCGCGAGU--UGCUCC- -5'
23407 3' -54.1 NC_005259.1 + 17583 0.66 0.83279
Target:  5'- cCGACGCUgccgcgCAAccucGGCGCgaugacguggggCGGCGAGGa -3'
miRNA:   3'- -GCUGCGGua----GUU----CCGCGa-----------GUUGCUCC- -5'
23407 3' -54.1 NC_005259.1 + 67415 0.66 0.831025
Target:  5'- cCGACaCCAUCGGGGUgccggGCUCAcgcuugagcgcguCGGGGa -3'
miRNA:   3'- -GCUGcGGUAGUUCCG-----CGAGUu------------GCUCC- -5'
23407 3' -54.1 NC_005259.1 + 67914 0.66 0.825682
Target:  5'- uCGGCGagGUCAAGcGCGUaggUC-GCGAGGa -3'
miRNA:   3'- -GCUGCggUAGUUC-CGCG---AGuUGCUCC- -5'
23407 3' -54.1 NC_005259.1 + 63538 0.67 0.807372
Target:  5'- gGAC-CUuuUCGAGGUGCUCGGCGGc- -3'
miRNA:   3'- gCUGcGGu-AGUUCCGCGAGUUGCUcc -5'
23407 3' -54.1 NC_005259.1 + 24739 0.67 0.807372
Target:  5'- uGAUGCgGUguggggugcCGAGGCGCUCAuCGAa- -3'
miRNA:   3'- gCUGCGgUA---------GUUCCGCGAGUuGCUcc -5'
23407 3' -54.1 NC_005259.1 + 16601 0.67 0.807372
Target:  5'- gCGAgGCCAUCGGacUGUUCAACGGGc -3'
miRNA:   3'- -GCUgCGGUAGUUccGCGAGUUGCUCc -5'
23407 3' -54.1 NC_005259.1 + 16793 0.67 0.807372
Target:  5'- uCGACGCgGUCGcguacaucGCGCUCGGggcCGGGGu -3'
miRNA:   3'- -GCUGCGgUAGUuc------CGCGAGUU---GCUCC- -5'
23407 3' -54.1 NC_005259.1 + 18924 0.67 0.797945
Target:  5'- uCGGCGaCUcgaucauccugAUCAAGGCcagCAACGAGGa -3'
miRNA:   3'- -GCUGC-GG-----------UAGUUCCGcgaGUUGCUCC- -5'
23407 3' -54.1 NC_005259.1 + 60335 0.67 0.797945
Target:  5'- uGACGC--UCAAGGCGgcgaUCAGguCGAGGc -3'
miRNA:   3'- gCUGCGguAGUUCCGCg---AGUU--GCUCC- -5'
23407 3' -54.1 NC_005259.1 + 22994 0.67 0.788351
Target:  5'- uCGACGCCGcCGAGGUcaccgaggacgGCUCGGucauCGAGa -3'
miRNA:   3'- -GCUGCGGUaGUUCCG-----------CGAGUU----GCUCc -5'
23407 3' -54.1 NC_005259.1 + 17801 0.68 0.7687
Target:  5'- --cCGCgAUagCGAGGCcggugaGCUCAGCGAGGc -3'
miRNA:   3'- gcuGCGgUA--GUUCCG------CGAGUUGCUCC- -5'
23407 3' -54.1 NC_005259.1 + 22701 0.68 0.758665
Target:  5'- cCGuCGCCGUCAccG-GCUCGAUGAGc -3'
miRNA:   3'- -GCuGCGGUAGUucCgCGAGUUGCUCc -5'
23407 3' -54.1 NC_005259.1 + 46656 0.68 0.758665
Target:  5'- aCGGCuGCgGUUGAGGUuCUCGGCGAGc -3'
miRNA:   3'- -GCUG-CGgUAGUUCCGcGAGUUGCUCc -5'
23407 3' -54.1 NC_005259.1 + 15569 0.68 0.73823
Target:  5'- gGugGCCAcccUCGGGGCcaGCgCGACGGGc -3'
miRNA:   3'- gCugCGGU---AGUUCCG--CGaGUUGCUCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.