miRNA display CGI


Results 1 - 20 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23417 5' -65 NC_005259.1 + 45337 0.66 0.35764
Target:  5'- cGUGGCcuGCgCCGCCUGg-GCCGcCGCg -3'
miRNA:   3'- -CGCCGc-CGgGGCGGGUagCGGCuGCG- -5'
23417 5' -65 NC_005259.1 + 37147 0.66 0.35764
Target:  5'- uGCGcGCauaGCCgucaCCGCCgCGccCGCCGACGCc -3'
miRNA:   3'- -CGC-CGc--CGG----GGCGG-GUa-GCGGCUGCG- -5'
23417 5' -65 NC_005259.1 + 43732 0.66 0.35764
Target:  5'- aUGGCGGCCaugCCGCCga--GCCGG-GCa -3'
miRNA:   3'- cGCCGCCGG---GGCGGguagCGGCUgCG- -5'
23417 5' -65 NC_005259.1 + 11000 0.66 0.35764
Target:  5'- cGCaaCGGCaCCGCgCCGgacgCGCCGAgGCa -3'
miRNA:   3'- -CGccGCCGgGGCG-GGUa---GCGGCUgCG- -5'
23417 5' -65 NC_005259.1 + 35267 0.66 0.35764
Target:  5'- cGCGcCcGCCgCGCCgggGUCGCCGAUGUg -3'
miRNA:   3'- -CGCcGcCGGgGCGGg--UAGCGGCUGCG- -5'
23417 5' -65 NC_005259.1 + 68849 0.66 0.35764
Target:  5'- -aGGUGGgCCaucaugucgacuUGCCCG-CGCCgGGCGCg -3'
miRNA:   3'- cgCCGCCgGG------------GCGGGUaGCGG-CUGCG- -5'
23417 5' -65 NC_005259.1 + 26378 0.66 0.349927
Target:  5'- gGUGGCGaGCCUguUGCUCG-CGauuCCGACGCc -3'
miRNA:   3'- -CGCCGC-CGGG--GCGGGUaGC---GGCUGCG- -5'
23417 5' -65 NC_005259.1 + 49435 0.66 0.349927
Target:  5'- cCGGCGaGCgCCGCCUugGUCggcaGCCgGAUGCc -3'
miRNA:   3'- cGCCGC-CGgGGCGGG--UAG----CGG-CUGCG- -5'
23417 5' -65 NC_005259.1 + 15377 0.66 0.349927
Target:  5'- -gGGCGaGCUgCCGCaaCCGUgGCCG-CGCa -3'
miRNA:   3'- cgCCGC-CGG-GGCG--GGUAgCGGCuGCG- -5'
23417 5' -65 NC_005259.1 + 50682 0.66 0.342332
Target:  5'- uCGGUgccgacgaGGCgCUGCUCGUCGUCG-CGCu -3'
miRNA:   3'- cGCCG--------CCGgGGCGGGUAGCGGCuGCG- -5'
23417 5' -65 NC_005259.1 + 53240 0.66 0.342332
Target:  5'- -aGGUucGcGCCgCCGacaCCGUCGCCGcCGCu -3'
miRNA:   3'- cgCCG--C-CGG-GGCg--GGUAGCGGCuGCG- -5'
23417 5' -65 NC_005259.1 + 33242 0.66 0.342332
Target:  5'- cGCGuaCGuGCCagauCUGCCCGcagCGCCGAUGCu -3'
miRNA:   3'- -CGCc-GC-CGG----GGCGGGUa--GCGGCUGCG- -5'
23417 5' -65 NC_005259.1 + 49633 0.66 0.342332
Target:  5'- uCGGCGGCa--GCCgCGUCGgCGAUGg -3'
miRNA:   3'- cGCCGCCGgggCGG-GUAGCgGCUGCg -5'
23417 5' -65 NC_005259.1 + 44506 0.66 0.334858
Target:  5'- cCGGgGuGCCCUGgCCAcccaCGCCGcCGCc -3'
miRNA:   3'- cGCCgC-CGGGGCgGGUa---GCGGCuGCG- -5'
23417 5' -65 NC_005259.1 + 56258 0.66 0.334858
Target:  5'- uCGGCGGCCuuGag---CGCCGcCGCc -3'
miRNA:   3'- cGCCGCCGGggCggguaGCGGCuGCG- -5'
23417 5' -65 NC_005259.1 + 47897 0.66 0.334117
Target:  5'- aGCGuCGGCUCguugagCGCCUugauggcGUCGCCGAgGCc -3'
miRNA:   3'- -CGCcGCCGGG------GCGGG-------UAGCGGCUgCG- -5'
23417 5' -65 NC_005259.1 + 18752 0.66 0.327503
Target:  5'- uCGGUGGUgcucgacauggCCUGCCaCAUCGCgGugGg -3'
miRNA:   3'- cGCCGCCG-----------GGGCGG-GUAGCGgCugCg -5'
23417 5' -65 NC_005259.1 + 67167 0.66 0.327503
Target:  5'- gGUGGCGGCCaugCCGCCgAUgaUGCC--CGCc -3'
miRNA:   3'- -CGCCGCCGG---GGCGGgUA--GCGGcuGCG- -5'
23417 5' -65 NC_005259.1 + 47951 0.66 0.327503
Target:  5'- aCGGCGGUgCCgaugGCCgCcgCGCCGccCGCg -3'
miRNA:   3'- cGCCGCCGgGG----CGG-GuaGCGGCu-GCG- -5'
23417 5' -65 NC_005259.1 + 44373 0.66 0.327503
Target:  5'- -aGGCucGCCacaCCGCCCAugaugUCGCCGA-GCa -3'
miRNA:   3'- cgCCGc-CGG---GGCGGGU-----AGCGGCUgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.