miRNA display CGI


Results 1 - 20 of 33 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23425 5' -56.2 NC_005259.1 + 56311 0.66 0.767432
Target:  5'- -gGCCGGacccucGUCGCCgUCGAGCaauCCGa -3'
miRNA:   3'- gaUGGCC------CAGUGGaAGCUCGaguGGC- -5'
23425 5' -56.2 NC_005259.1 + 43816 0.66 0.766445
Target:  5'- uUGCCGGGcgUACCgcCGGacacagggccgccGCUCGCCa -3'
miRNA:   3'- gAUGGCCCa-GUGGaaGCU-------------CGAGUGGc -5'
23425 5' -56.2 NC_005259.1 + 40024 0.66 0.757501
Target:  5'- -gACCGGGaCGugaugCUUUGAGgUCGCCGg -3'
miRNA:   3'- gaUGGCCCaGUg----GAAGCUCgAGUGGC- -5'
23425 5' -56.2 NC_005259.1 + 30157 0.66 0.747449
Target:  5'- -gACCGGGcCGCCUaCaGGC-CGCCa -3'
miRNA:   3'- gaUGGCCCaGUGGAaGcUCGaGUGGc -5'
23425 5' -56.2 NC_005259.1 + 53743 0.66 0.747449
Target:  5'- -cGCCGGGUguCCacUCGGuGC-CGCCGa -3'
miRNA:   3'- gaUGGCCCAguGGa-AGCU-CGaGUGGC- -5'
23425 5' -56.2 NC_005259.1 + 2742 0.66 0.747449
Target:  5'- aUGCCGaGGUCGCCgUCGuGCaguacgacCACCu -3'
miRNA:   3'- gAUGGC-CCAGUGGaAGCuCGa-------GUGGc -5'
23425 5' -56.2 NC_005259.1 + 60199 0.66 0.738308
Target:  5'- -gACCGGGccacgaucUCGCCgaucucgucggcgcUGAGCUCGCUGg -3'
miRNA:   3'- gaUGGCCC--------AGUGGaa------------GCUCGAGUGGC- -5'
23425 5' -56.2 NC_005259.1 + 22987 0.66 0.737287
Target:  5'- --cCCGGuGUCgacGCCgcCGAGgUCACCGa -3'
miRNA:   3'- gauGGCC-CAG---UGGaaGCUCgAGUGGC- -5'
23425 5' -56.2 NC_005259.1 + 58208 0.66 0.737287
Target:  5'- uUGCCGGuGUCagggucagugGCC-UCGAGCUCGggcUCGg -3'
miRNA:   3'- gAUGGCC-CAG----------UGGaAGCUCGAGU---GGC- -5'
23425 5' -56.2 NC_005259.1 + 27323 0.66 0.727024
Target:  5'- uUGCgCGGGUUGCCUcgguaGAGCauccaaUCGCCGu -3'
miRNA:   3'- gAUG-GCCCAGUGGAag---CUCG------AGUGGC- -5'
23425 5' -56.2 NC_005259.1 + 52743 0.67 0.706241
Target:  5'- -cGCCGGGaUCgAUCUgcacaacaUCGAGCUCGUCGg -3'
miRNA:   3'- gaUGGCCC-AG-UGGA--------AGCUCGAGUGGC- -5'
23425 5' -56.2 NC_005259.1 + 6931 0.67 0.685185
Target:  5'- -cGCCGc--CGCCUUgaggcCGAGCUCGCCGc -3'
miRNA:   3'- gaUGGCccaGUGGAA-----GCUCGAGUGGC- -5'
23425 5' -56.2 NC_005259.1 + 43262 0.67 0.685185
Target:  5'- -cGCCGGGU-GCCUgaGAGUUgACCGc -3'
miRNA:   3'- gaUGGCCCAgUGGAagCUCGAgUGGC- -5'
23425 5' -56.2 NC_005259.1 + 68630 0.67 0.674579
Target:  5'- -aGCCGGG-CACCcUCG-GCgaaCACCa -3'
miRNA:   3'- gaUGGCCCaGUGGaAGCuCGa--GUGGc -5'
23425 5' -56.2 NC_005259.1 + 31796 0.67 0.653264
Target:  5'- -gACCGcGUCGUCaUCGAGCUCgACCGa -3'
miRNA:   3'- gaUGGCcCAGUGGaAGCUCGAG-UGGC- -5'
23425 5' -56.2 NC_005259.1 + 31416 0.67 0.648989
Target:  5'- --cCCGaGGUCGCCgcugagcaacucgUUGAGC-CACCGg -3'
miRNA:   3'- gauGGC-CCAGUGGa------------AGCUCGaGUGGC- -5'
23425 5' -56.2 NC_005259.1 + 8406 0.68 0.642574
Target:  5'- -aGCCGGGcCACCUcgcuggCGAGCaugcgaugcucgUUGCCGg -3'
miRNA:   3'- gaUGGCCCaGUGGAa-----GCUCG------------AGUGGC- -5'
23425 5' -56.2 NC_005259.1 + 30323 0.68 0.642574
Target:  5'- -cGCCGcGUCguACCUgacacgcagcaCGAGCUCACCGu -3'
miRNA:   3'- gaUGGCcCAG--UGGAa----------GCUCGAGUGGC- -5'
23425 5' -56.2 NC_005259.1 + 12137 0.68 0.631875
Target:  5'- -cACCGGGUCugCUUUcuugaUCACCGc -3'
miRNA:   3'- gaUGGCCCAGugGAAGcucg-AGUGGC- -5'
23425 5' -56.2 NC_005259.1 + 46788 0.68 0.621176
Target:  5'- -cGCCGGGccgaaCACCgagccugCGAGCgcacCACCGg -3'
miRNA:   3'- gaUGGCCCa----GUGGaa-----GCUCGa---GUGGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.