miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23428 5' -56.7 NC_005259.1 + 15237 0.65 0.705485
Target:  5'- -aACGUCGACCGCGaauauCUGGaccgcuaccucaauCAGGUCGCc -3'
miRNA:   3'- caUGCAGUUGGUGU-----GGCC--------------GUCCGGUG- -5'
23428 5' -56.7 NC_005259.1 + 61761 0.66 0.702305
Target:  5'- uGUGCGgcggCAAUcaccgccgcauucugCACACCGGC-GGCCu- -3'
miRNA:   3'- -CAUGCa---GUUG---------------GUGUGGCCGuCCGGug -5'
23428 5' -56.7 NC_005259.1 + 424 0.66 0.702305
Target:  5'- --cCGUCGAggaugaCGCACCgaucuacgucacgguGGCAGGCCAg -3'
miRNA:   3'- cauGCAGUUg-----GUGUGG---------------CCGUCCGGUg -5'
23428 5' -56.7 NC_005259.1 + 44561 0.66 0.68739
Target:  5'- -gGCaggCAGCgCGCcgACCGGCAGGCuCAUg -3'
miRNA:   3'- caUGca-GUUG-GUG--UGGCCGUCCG-GUG- -5'
23428 5' -56.7 NC_005259.1 + 56668 0.66 0.68739
Target:  5'- -cGCGUCAcgggcucguugcGCCACccauaCGGCugcgagguGGCCACg -3'
miRNA:   3'- caUGCAGU------------UGGUGug---GCCGu-------CCGGUG- -5'
23428 5' -56.7 NC_005259.1 + 9411 0.66 0.68632
Target:  5'- gGUACGggugcGCCACACCGuugucgaGCAG-CCACa -3'
miRNA:   3'- -CAUGCagu--UGGUGUGGC-------CGUCcGGUG- -5'
23428 5' -56.7 NC_005259.1 + 56078 0.66 0.676672
Target:  5'- --cCGUCGAgCAgAUCGGUgcucgucgGGGCCACc -3'
miRNA:   3'- cauGCAGUUgGUgUGGCCG--------UCCGGUG- -5'
23428 5' -56.7 NC_005259.1 + 53938 0.66 0.666992
Target:  5'- -gGCGUCGACCAgcguuuccCACCcggugaacauggucaGCAGGCCGg -3'
miRNA:   3'- caUGCAGUUGGU--------GUGGc--------------CGUCCGGUg -5'
23428 5' -56.7 NC_005259.1 + 36253 0.66 0.665914
Target:  5'- cUGCGUCGgcagcGCCACGCCGGaCAGauugaGCaGCg -3'
miRNA:   3'- cAUGCAGU-----UGGUGUGGCC-GUC-----CGgUG- -5'
23428 5' -56.7 NC_005259.1 + 35869 0.66 0.665914
Target:  5'- -cGCGUCcACCGCAgCCgccgccgaGGCAGaCCACg -3'
miRNA:   3'- caUGCAGuUGGUGU-GG--------CCGUCcGGUG- -5'
23428 5' -56.7 NC_005259.1 + 31053 0.66 0.664837
Target:  5'- -cGCGUCGACCACAuaguugaucgggUCGGCgAGGUucccgagCGCg -3'
miRNA:   3'- caUGCAGUUGGUGU------------GGCCG-UCCG-------GUG- -5'
23428 5' -56.7 NC_005259.1 + 52572 0.67 0.644317
Target:  5'- ---gGUCGACCGgACCGGCcugAGcGUCGCc -3'
miRNA:   3'- caugCAGUUGGUgUGGCCG---UC-CGGUG- -5'
23428 5' -56.7 NC_005259.1 + 14503 0.67 0.644317
Target:  5'- gGUGCccgCAugCACACCGGCGaGCaCGCn -3'
miRNA:   3'- -CAUGca-GUugGUGUGGCCGUcCG-GUG- -5'
23428 5' -56.7 NC_005259.1 + 14308 0.67 0.643235
Target:  5'- gGUGCGUaUGGCCGCccucgacGCCGccgcccgcguGCGGGCCGCc -3'
miRNA:   3'- -CAUGCA-GUUGGUG-------UGGC----------CGUCCGGUG- -5'
23428 5' -56.7 NC_005259.1 + 43868 0.67 0.633497
Target:  5'- --cCGU-GACgACACCGGCAGcguuGCCGCc -3'
miRNA:   3'- cauGCAgUUGgUGUGGCCGUC----CGGUG- -5'
23428 5' -56.7 NC_005259.1 + 44525 0.67 0.622676
Target:  5'- -cACG-CcGCCGC-CCGGCAGuCCACu -3'
miRNA:   3'- caUGCaGuUGGUGuGGCCGUCcGGUG- -5'
23428 5' -56.7 NC_005259.1 + 27825 0.67 0.622676
Target:  5'- -gGC-UCGACUucuGCGCgaGGUAGGCCGCg -3'
miRNA:   3'- caUGcAGUUGG---UGUGg-CCGUCCGGUG- -5'
23428 5' -56.7 NC_005259.1 + 51106 0.67 0.622676
Target:  5'- -gGCGg-GAUCuguCCGGCAGGCCAUc -3'
miRNA:   3'- caUGCagUUGGuguGGCCGUCCGGUG- -5'
23428 5' -56.7 NC_005259.1 + 57665 0.67 0.622676
Target:  5'- -cACGUCGACCGuguCCGGCcaaucgaccguGGCCAg -3'
miRNA:   3'- caUGCAGUUGGUgu-GGCCGu----------CCGGUg -5'
23428 5' -56.7 NC_005259.1 + 49635 0.67 0.611863
Target:  5'- -gGCGgCAGCCGCGUCGGCGauGGCgGCc -3'
miRNA:   3'- caUGCaGUUGGUGUGGCCGU--CCGgUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.