miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23432 3' -54.8 NC_005259.1 + 41675 0.66 0.834403
Target:  5'- -cUGCACCG-CGUgcGUGGCcACCGCg -3'
miRNA:   3'- gcAUGUGGCaGCGacUACCG-UGGUGg -5'
23432 3' -54.8 NC_005259.1 + 46716 0.66 0.834403
Target:  5'- gCGUGCAUucucguugagcaCGUaggugaugccCGC-GAUGGCugCGCCg -3'
miRNA:   3'- -GCAUGUG------------GCA----------GCGaCUACCGugGUGG- -5'
23432 3' -54.8 NC_005259.1 + 67771 0.66 0.834403
Target:  5'- cCGgcCACCGaccacgCGgUGAccuuguUGGCACCGCg -3'
miRNA:   3'- -GCauGUGGCa-----GCgACU------ACCGUGGUGg -5'
23432 3' -54.8 NC_005259.1 + 36440 0.66 0.825574
Target:  5'- gCGU-CGCCGaggucgacCGCgucgagGGUGaGCACCGCCc -3'
miRNA:   3'- -GCAuGUGGCa-------GCGa-----CUAC-CGUGGUGG- -5'
23432 3' -54.8 NC_005259.1 + 31565 0.66 0.825574
Target:  5'- cCGcUGCACCG-CGcCUGAUcGuCGCCAUCa -3'
miRNA:   3'- -GC-AUGUGGCaGC-GACUAcC-GUGGUGG- -5'
23432 3' -54.8 NC_005259.1 + 12135 0.66 0.820182
Target:  5'- --aGCACCGggucUGCUuucuugaucaccgccGAcGGCACCGCCc -3'
miRNA:   3'- gcaUGUGGCa---GCGA---------------CUaCCGUGGUGG- -5'
23432 3' -54.8 NC_005259.1 + 38718 0.66 0.813805
Target:  5'- gGUugACCacCGCUGccgccguaccggcgGUGGC-CCGCCg -3'
miRNA:   3'- gCAugUGGcaGCGAC--------------UACCGuGGUGG- -5'
23432 3' -54.8 NC_005259.1 + 53157 0.66 0.807338
Target:  5'- cCGcUACGCCGagGCcGAUcuCGCCACCg -3'
miRNA:   3'- -GC-AUGUGGCagCGaCUAccGUGGUGG- -5'
23432 3' -54.8 NC_005259.1 + 22518 0.66 0.806407
Target:  5'- aCGUgcGCACCGUCGCcGGUGauuuccaGCAguccgaccUCGCCg -3'
miRNA:   3'- -GCA--UGUGGCAGCGaCUAC-------CGU--------GGUGG- -5'
23432 3' -54.8 NC_005259.1 + 34455 0.66 0.792238
Target:  5'- cCGgGCAgCGugUCGCUGAUGaGCAgcuugguggugucccCCGCCg -3'
miRNA:   3'- -GCaUGUgGC--AGCGACUAC-CGU---------------GGUGG- -5'
23432 3' -54.8 NC_005259.1 + 25183 0.66 0.788398
Target:  5'- cCGUACGCCGcCGCcGAU--C-CCACCg -3'
miRNA:   3'- -GCAUGUGGCaGCGaCUAccGuGGUGG- -5'
23432 3' -54.8 NC_005259.1 + 45304 0.66 0.788398
Target:  5'- --cGCGCCGgugaCGCcGA-GGCcGCCGCCg -3'
miRNA:   3'- gcaUGUGGCa---GCGaCUaCCG-UGGUGG- -5'
23432 3' -54.8 NC_005259.1 + 52952 0.66 0.788398
Target:  5'- cCGUaaGCAcCCGcCGCUGcccGGCugCAUCg -3'
miRNA:   3'- -GCA--UGU-GGCaGCGACua-CCGugGUGG- -5'
23432 3' -54.8 NC_005259.1 + 26945 0.66 0.788398
Target:  5'- -aUACGCCGcUGCUGGaacgUGcGCAgCGCCg -3'
miRNA:   3'- gcAUGUGGCaGCGACU----AC-CGUgGUGG- -5'
23432 3' -54.8 NC_005259.1 + 52138 0.67 0.778688
Target:  5'- cCGUccgGCACC-UCGCcGAggcaGGCAgCGCCg -3'
miRNA:   3'- -GCA---UGUGGcAGCGaCUa---CCGUgGUGG- -5'
23432 3' -54.8 NC_005259.1 + 48205 0.67 0.778688
Target:  5'- --cAUGCCGUCGUa-GUGGUACgACCg -3'
miRNA:   3'- gcaUGUGGCAGCGacUACCGUGgUGG- -5'
23432 3' -54.8 NC_005259.1 + 46922 0.67 0.778688
Target:  5'- gCGUGCGCCGccgaGCUugcccgccGCGCCGCCg -3'
miRNA:   3'- -GCAUGUGGCag--CGAcuac----CGUGGUGG- -5'
23432 3' -54.8 NC_005259.1 + 44978 0.67 0.768833
Target:  5'- cCGaGgGCCGgugCGaCUGccgaGGCACCGCCg -3'
miRNA:   3'- -GCaUgUGGCa--GC-GACua--CCGUGGUGG- -5'
23432 3' -54.8 NC_005259.1 + 65119 0.67 0.768833
Target:  5'- gCGU-CACCGUCgGCgcaccGGCgGCCACCc -3'
miRNA:   3'- -GCAuGUGGCAG-CGacua-CCG-UGGUGG- -5'
23432 3' -54.8 NC_005259.1 + 11020 0.67 0.768833
Target:  5'- --cGCGCCGaggcaggaguUCGCcgGGUGGuCACCGCa -3'
miRNA:   3'- gcaUGUGGC----------AGCGa-CUACC-GUGGUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.