Results 1 - 20 of 66 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23432 | 3' | -54.8 | NC_005259.1 | + | 41675 | 0.66 | 0.834403 |
Target: 5'- -cUGCACCG-CGUgcGUGGCcACCGCg -3' miRNA: 3'- gcAUGUGGCaGCGacUACCG-UGGUGg -5' |
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23432 | 3' | -54.8 | NC_005259.1 | + | 67771 | 0.66 | 0.834403 |
Target: 5'- cCGgcCACCGaccacgCGgUGAccuuguUGGCACCGCg -3' miRNA: 3'- -GCauGUGGCa-----GCgACU------ACCGUGGUGg -5' |
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23432 | 3' | -54.8 | NC_005259.1 | + | 46716 | 0.66 | 0.834403 |
Target: 5'- gCGUGCAUucucguugagcaCGUaggugaugccCGC-GAUGGCugCGCCg -3' miRNA: 3'- -GCAUGUG------------GCA----------GCGaCUACCGugGUGG- -5' |
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23432 | 3' | -54.8 | NC_005259.1 | + | 36440 | 0.66 | 0.825574 |
Target: 5'- gCGU-CGCCGaggucgacCGCgucgagGGUGaGCACCGCCc -3' miRNA: 3'- -GCAuGUGGCa-------GCGa-----CUAC-CGUGGUGG- -5' |
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23432 | 3' | -54.8 | NC_005259.1 | + | 31565 | 0.66 | 0.825574 |
Target: 5'- cCGcUGCACCG-CGcCUGAUcGuCGCCAUCa -3' miRNA: 3'- -GC-AUGUGGCaGC-GACUAcC-GUGGUGG- -5' |
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23432 | 3' | -54.8 | NC_005259.1 | + | 12135 | 0.66 | 0.820182 |
Target: 5'- --aGCACCGggucUGCUuucuugaucaccgccGAcGGCACCGCCc -3' miRNA: 3'- gcaUGUGGCa---GCGA---------------CUaCCGUGGUGG- -5' |
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23432 | 3' | -54.8 | NC_005259.1 | + | 38718 | 0.66 | 0.813805 |
Target: 5'- gGUugACCacCGCUGccgccguaccggcgGUGGC-CCGCCg -3' miRNA: 3'- gCAugUGGcaGCGAC--------------UACCGuGGUGG- -5' |
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23432 | 3' | -54.8 | NC_005259.1 | + | 53157 | 0.66 | 0.807338 |
Target: 5'- cCGcUACGCCGagGCcGAUcuCGCCACCg -3' miRNA: 3'- -GC-AUGUGGCagCGaCUAccGUGGUGG- -5' |
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23432 | 3' | -54.8 | NC_005259.1 | + | 22518 | 0.66 | 0.806407 |
Target: 5'- aCGUgcGCACCGUCGCcGGUGauuuccaGCAguccgaccUCGCCg -3' miRNA: 3'- -GCA--UGUGGCAGCGaCUAC-------CGU--------GGUGG- -5' |
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23432 | 3' | -54.8 | NC_005259.1 | + | 34455 | 0.66 | 0.792238 |
Target: 5'- cCGgGCAgCGugUCGCUGAUGaGCAgcuugguggugucccCCGCCg -3' miRNA: 3'- -GCaUGUgGC--AGCGACUAC-CGU---------------GGUGG- -5' |
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23432 | 3' | -54.8 | NC_005259.1 | + | 25183 | 0.66 | 0.788398 |
Target: 5'- cCGUACGCCGcCGCcGAU--C-CCACCg -3' miRNA: 3'- -GCAUGUGGCaGCGaCUAccGuGGUGG- -5' |
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23432 | 3' | -54.8 | NC_005259.1 | + | 45304 | 0.66 | 0.788398 |
Target: 5'- --cGCGCCGgugaCGCcGA-GGCcGCCGCCg -3' miRNA: 3'- gcaUGUGGCa---GCGaCUaCCG-UGGUGG- -5' |
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23432 | 3' | -54.8 | NC_005259.1 | + | 52952 | 0.66 | 0.788398 |
Target: 5'- cCGUaaGCAcCCGcCGCUGcccGGCugCAUCg -3' miRNA: 3'- -GCA--UGU-GGCaGCGACua-CCGugGUGG- -5' |
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23432 | 3' | -54.8 | NC_005259.1 | + | 26945 | 0.66 | 0.788398 |
Target: 5'- -aUACGCCGcUGCUGGaacgUGcGCAgCGCCg -3' miRNA: 3'- gcAUGUGGCaGCGACU----AC-CGUgGUGG- -5' |
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23432 | 3' | -54.8 | NC_005259.1 | + | 52138 | 0.67 | 0.778688 |
Target: 5'- cCGUccgGCACC-UCGCcGAggcaGGCAgCGCCg -3' miRNA: 3'- -GCA---UGUGGcAGCGaCUa---CCGUgGUGG- -5' |
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23432 | 3' | -54.8 | NC_005259.1 | + | 48205 | 0.67 | 0.778688 |
Target: 5'- --cAUGCCGUCGUa-GUGGUACgACCg -3' miRNA: 3'- gcaUGUGGCAGCGacUACCGUGgUGG- -5' |
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23432 | 3' | -54.8 | NC_005259.1 | + | 46922 | 0.67 | 0.778688 |
Target: 5'- gCGUGCGCCGccgaGCUugcccgccGCGCCGCCg -3' miRNA: 3'- -GCAUGUGGCag--CGAcuac----CGUGGUGG- -5' |
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23432 | 3' | -54.8 | NC_005259.1 | + | 11020 | 0.67 | 0.768833 |
Target: 5'- --cGCGCCGaggcaggaguUCGCcgGGUGGuCACCGCa -3' miRNA: 3'- gcaUGUGGC----------AGCGa-CUACC-GUGGUGg -5' |
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23432 | 3' | -54.8 | NC_005259.1 | + | 44978 | 0.67 | 0.768833 |
Target: 5'- cCGaGgGCCGgugCGaCUGccgaGGCACCGCCg -3' miRNA: 3'- -GCaUgUGGCa--GC-GACua--CCGUGGUGG- -5' |
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23432 | 3' | -54.8 | NC_005259.1 | + | 65119 | 0.67 | 0.768833 |
Target: 5'- gCGU-CACCGUCgGCgcaccGGCgGCCACCc -3' miRNA: 3'- -GCAuGUGGCAG-CGacua-CCG-UGGUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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