miRNA display CGI


Results 1 - 20 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23436 3' -65.8 NC_005259.1 + 35982 0.66 0.323191
Target:  5'- aCGGCGGGaaACCgacggcgagGCCGGacUGCaccgaGGUGGCc -3'
miRNA:   3'- -GCCGCCCggUGG---------CGGCC--AUG-----CCGCCG- -5'
23436 3' -65.8 NC_005259.1 + 7428 0.66 0.323191
Target:  5'- uCGGCGGuGCC-CgCGCCGc-AUGGCaGCg -3'
miRNA:   3'- -GCCGCC-CGGuG-GCGGCcaUGCCGcCG- -5'
23436 3' -65.8 NC_005259.1 + 51824 0.66 0.295387
Target:  5'- gGGCGGGCagacCCGcCCGGUugauCGGCc-- -3'
miRNA:   3'- gCCGCCCGgu--GGC-GGCCAu---GCCGccg -5'
23436 3' -65.8 NC_005259.1 + 4602 0.66 0.316061
Target:  5'- -cGCcauaGGCaCGCUGUCGGgcCGGUGGCg -3'
miRNA:   3'- gcCGc---CCG-GUGGCGGCCauGCCGCCG- -5'
23436 3' -65.8 NC_005259.1 + 27107 0.66 0.30697
Target:  5'- gCGGUGGGCUGugucaugcggaucuCCuaCGGUuugAgGGCGGCu -3'
miRNA:   3'- -GCCGCCCGGU--------------GGcgGCCA---UgCCGCCG- -5'
23436 3' -65.8 NC_005259.1 + 64444 0.66 0.323191
Target:  5'- uGcCGGGgCGCUGCCcuUGgGGCGGCg -3'
miRNA:   3'- gCcGCCCgGUGGCGGccAUgCCGCCG- -5'
23436 3' -65.8 NC_005259.1 + 2228 0.66 0.292711
Target:  5'- cCGGCcucgccauuugucGGCgACaGCCGGUACGGCGa- -3'
miRNA:   3'- -GCCGc------------CCGgUGgCGGCCAUGCCGCcg -5'
23436 3' -65.8 NC_005259.1 + 53530 0.66 0.295387
Target:  5'- gCGGCacGGGCuCGgUGcCCGGUGuCGGCucgGGCg -3'
miRNA:   3'- -GCCG--CCCG-GUgGC-GGCCAU-GCCG---CCG- -5'
23436 3' -65.8 NC_005259.1 + 32353 0.66 0.295387
Target:  5'- -cGCGaGGUUgaugACCGCCGuGUAgGGCGGg -3'
miRNA:   3'- gcCGC-CCGG----UGGCGGC-CAUgCCGCCg -5'
23436 3' -65.8 NC_005259.1 + 45632 0.66 0.295387
Target:  5'- gGGcCGGGCaGCgCGCCGGUGCcGCcGUg -3'
miRNA:   3'- gCC-GCCCGgUG-GCGGCCAUGcCGcCG- -5'
23436 3' -65.8 NC_005259.1 + 12015 0.66 0.30905
Target:  5'- uCGGU-GGCC-UUGUaCGGUGCgGGCGGCa -3'
miRNA:   3'- -GCCGcCCGGuGGCG-GCCAUG-CCGCCG- -5'
23436 3' -65.8 NC_005259.1 + 48059 0.66 0.30905
Target:  5'- aCGGCGGGUagCGCCGCCGcGcccugaGCGaUGGUg -3'
miRNA:   3'- -GCCGCCCG--GUGGCGGC-Ca-----UGCcGCCG- -5'
23436 3' -65.8 NC_005259.1 + 68849 0.66 0.300795
Target:  5'- aGGUGGGCCAucaugucgacuugccCgCGCCGGgcgcGCcgaugagguagaugaGGCGGUg -3'
miRNA:   3'- gCCGCCCGGU---------------G-GCGGCCa---UG---------------CCGCCG- -5'
23436 3' -65.8 NC_005259.1 + 68703 0.66 0.323191
Target:  5'- aGGCGGGCaGCgCGUCGGUGCccgagaacuGG-GGUc -3'
miRNA:   3'- gCCGCCCGgUG-GCGGCCAUG---------CCgCCG- -5'
23436 3' -65.8 NC_005259.1 + 25424 0.66 0.33044
Target:  5'- aCGGCGaGGUCgaggaaugcgaGCCGUaugaGGU-CGGCGaGCg -3'
miRNA:   3'- -GCCGC-CCGG-----------UGGCGg---CCAuGCCGC-CG- -5'
23436 3' -65.8 NC_005259.1 + 46684 0.66 0.295387
Target:  5'- uCGGCcuGaGCCGCCGCCGcGUcccucgACGcGCGuGCa -3'
miRNA:   3'- -GCCGc-C-CGGUGGCGGC-CA------UGC-CGC-CG- -5'
23436 3' -65.8 NC_005259.1 + 17340 0.66 0.33044
Target:  5'- cCGGUcaacGUCGCCGUCgaGGU-CGGCGGCu -3'
miRNA:   3'- -GCCGcc--CGGUGGCGG--CCAuGCCGCCG- -5'
23436 3' -65.8 NC_005259.1 + 67711 0.67 0.288733
Target:  5'- uCGGCGGGCauacCCGucagccucgauCCGaUAcCGGCGGCc -3'
miRNA:   3'- -GCCGCCCGgu--GGC-----------GGCcAU-GCCGCCG- -5'
23436 3' -65.8 NC_005259.1 + 24339 0.67 0.288733
Target:  5'- aCGcGCuGGCCuACCGCCGGgugcucGCacaccgaggucuGGUGGCg -3'
miRNA:   3'- -GC-CGcCCGG-UGGCGGCCa-----UG------------CCGCCG- -5'
23436 3' -65.8 NC_005259.1 + 3105 0.67 0.28155
Target:  5'- uGaGCGGGCggccauugcgcggCACCGUgGGcaGCGGaCGGCa -3'
miRNA:   3'- gC-CGCCCG-------------GUGGCGgCCa-UGCC-GCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.