Results 1 - 20 of 90 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23436 | 3' | -65.8 | NC_005259.1 | + | 164 | 0.69 | 0.183851 |
Target: 5'- cCGGCGGGguccggcaCCACCGaCuCGGUcaucuaugGCGcGUGGCg -3' miRNA: 3'- -GCCGCCC--------GGUGGC-G-GCCA--------UGC-CGCCG- -5' |
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23436 | 3' | -65.8 | NC_005259.1 | + | 738 | 0.76 | 0.057349 |
Target: 5'- cCGGCGGuGCCuacGCCGCCGGUgccuaccGCguccaccgcgccgaGGCGGCu -3' miRNA: 3'- -GCCGCC-CGG---UGGCGGCCA-------UG--------------CCGCCG- -5' |
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23436 | 3' | -65.8 | NC_005259.1 | + | 2041 | 0.68 | 0.212735 |
Target: 5'- gCGGUGGGCgguCACCGgcaCCGagacACGGCGGUu -3' miRNA: 3'- -GCCGCCCG---GUGGC---GGCca--UGCCGCCG- -5' |
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23436 | 3' | -65.8 | NC_005259.1 | + | 2228 | 0.66 | 0.292711 |
Target: 5'- cCGGCcucgccauuugucGGCgACaGCCGGUACGGCGa- -3' miRNA: 3'- -GCCGc------------CCGgUGgCGGCCAUGCCGCcg -5' |
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23436 | 3' | -65.8 | NC_005259.1 | + | 3105 | 0.67 | 0.28155 |
Target: 5'- uGaGCGGGCggccauugcgcggCACCGUgGGcaGCGGaCGGCa -3' miRNA: 3'- gC-CGCCCG-------------GUGGCGgCCa-UGCC-GCCG- -5' |
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23436 | 3' | -65.8 | NC_005259.1 | + | 3275 | 0.7 | 0.162484 |
Target: 5'- gGGUGGuuucccgucGCCGCCucGCCGGUcccuCGGCGaGCg -3' miRNA: 3'- gCCGCC---------CGGUGG--CGGCCAu---GCCGC-CG- -5' |
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23436 | 3' | -65.8 | NC_005259.1 | + | 4275 | 0.68 | 0.21739 |
Target: 5'- gGGCGGcugcgcuGCCACgaGCaCGGacCGGCGGCc -3' miRNA: 3'- gCCGCC-------CGGUGg-CG-GCCauGCCGCCG- -5' |
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23436 | 3' | -65.8 | NC_005259.1 | + | 4482 | 0.71 | 0.134274 |
Target: 5'- uCGGCGGuggaccauggugaucGCCACCgcGCCGGgagugGCGcugcGCGGCa -3' miRNA: 3'- -GCCGCC---------------CGGUGG--CGGCCa----UGC----CGCCG- -5' |
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23436 | 3' | -65.8 | NC_005259.1 | + | 4602 | 0.66 | 0.316061 |
Target: 5'- -cGCcauaGGCaCGCUGUCGGgcCGGUGGCg -3' miRNA: 3'- gcCGc---CCG-GUGGCGGCCauGCCGCCG- -5' |
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23436 | 3' | -65.8 | NC_005259.1 | + | 5711 | 0.75 | 0.067881 |
Target: 5'- -cGCcaaGGCCAgCGCCGG-ACGGCGGCc -3' miRNA: 3'- gcCGc--CCGGUgGCGGCCaUGCCGCCG- -5' |
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23436 | 3' | -65.8 | NC_005259.1 | + | 7428 | 0.66 | 0.323191 |
Target: 5'- uCGGCGGuGCC-CgCGCCGc-AUGGCaGCg -3' miRNA: 3'- -GCCGCC-CGGuG-GCGGCcaUGCCGcCG- -5' |
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23436 | 3' | -65.8 | NC_005259.1 | + | 8334 | 0.74 | 0.082815 |
Target: 5'- aCGGCGaucagccggucacGCUGCUGCCGGUAucgcuCGGCGGCg -3' miRNA: 3'- -GCCGCc------------CGGUGGCGGCCAU-----GCCGCCG- -5' |
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23436 | 3' | -65.8 | NC_005259.1 | + | 8947 | 0.71 | 0.152278 |
Target: 5'- aCGGUGGGCgCGCCguggacgggcaccguGCCGGgACGuaggugccaGCGGCg -3' miRNA: 3'- -GCCGCCCG-GUGG---------------CGGCCaUGC---------CGCCG- -5' |
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23436 | 3' | -65.8 | NC_005259.1 | + | 9106 | 0.68 | 0.245435 |
Target: 5'- gGGCGGGgaacucaaucCCACgCGCCccGGUACgGGCaGCc -3' miRNA: 3'- gCCGCCC----------GGUG-GCGG--CCAUG-CCGcCG- -5' |
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23436 | 3' | -65.8 | NC_005259.1 | + | 10773 | 0.67 | 0.263295 |
Target: 5'- gGGCGGGUCAUCGa-GGUG-GGCcGCg -3' miRNA: 3'- gCCGCCCGGUGGCggCCAUgCCGcCG- -5' |
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23436 | 3' | -65.8 | NC_005259.1 | + | 12015 | 0.66 | 0.30905 |
Target: 5'- uCGGU-GGCC-UUGUaCGGUGCgGGCGGCa -3' miRNA: 3'- -GCCGcCCGGuGGCG-GCCAUG-CCGCCG- -5' |
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23436 | 3' | -65.8 | NC_005259.1 | + | 13086 | 0.71 | 0.132922 |
Target: 5'- cCGGCcauccGGuGCCACCGaccCCGGcccgcuCGGCGGCu -3' miRNA: 3'- -GCCG-----CC-CGGUGGC---GGCCau----GCCGCCG- -5' |
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23436 | 3' | -65.8 | NC_005259.1 | + | 13221 | 0.67 | 0.268856 |
Target: 5'- gCGGUGGGCCucgACCgGCCaccGUGagggccgagcaccCGGCGGUa -3' miRNA: 3'- -GCCGCCCGG---UGG-CGGc--CAU-------------GCCGCCG- -5' |
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23436 | 3' | -65.8 | NC_005259.1 | + | 13419 | 0.73 | 0.105637 |
Target: 5'- uGGCcgGGGUCGCCGCCGGggccGCGcuaGGCg -3' miRNA: 3'- gCCG--CCCGGUGGCGGCCa---UGCcg-CCG- -5' |
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23436 | 3' | -65.8 | NC_005259.1 | + | 16226 | 0.68 | 0.245435 |
Target: 5'- aGGUGGGCCgaacgcACC-CCGGUGCuGC-GCa -3' miRNA: 3'- gCCGCCCGG------UGGcGGCCAUGcCGcCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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