miRNA display CGI


Results 1 - 20 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23436 3' -65.8 NC_005259.1 + 164 0.69 0.183851
Target:  5'- cCGGCGGGguccggcaCCACCGaCuCGGUcaucuaugGCGcGUGGCg -3'
miRNA:   3'- -GCCGCCC--------GGUGGC-G-GCCA--------UGC-CGCCG- -5'
23436 3' -65.8 NC_005259.1 + 738 0.76 0.057349
Target:  5'- cCGGCGGuGCCuacGCCGCCGGUgccuaccGCguccaccgcgccgaGGCGGCu -3'
miRNA:   3'- -GCCGCC-CGG---UGGCGGCCA-------UG--------------CCGCCG- -5'
23436 3' -65.8 NC_005259.1 + 2041 0.68 0.212735
Target:  5'- gCGGUGGGCgguCACCGgcaCCGagacACGGCGGUu -3'
miRNA:   3'- -GCCGCCCG---GUGGC---GGCca--UGCCGCCG- -5'
23436 3' -65.8 NC_005259.1 + 2228 0.66 0.292711
Target:  5'- cCGGCcucgccauuugucGGCgACaGCCGGUACGGCGa- -3'
miRNA:   3'- -GCCGc------------CCGgUGgCGGCCAUGCCGCcg -5'
23436 3' -65.8 NC_005259.1 + 3105 0.67 0.28155
Target:  5'- uGaGCGGGCggccauugcgcggCACCGUgGGcaGCGGaCGGCa -3'
miRNA:   3'- gC-CGCCCG-------------GUGGCGgCCa-UGCC-GCCG- -5'
23436 3' -65.8 NC_005259.1 + 3275 0.7 0.162484
Target:  5'- gGGUGGuuucccgucGCCGCCucGCCGGUcccuCGGCGaGCg -3'
miRNA:   3'- gCCGCC---------CGGUGG--CGGCCAu---GCCGC-CG- -5'
23436 3' -65.8 NC_005259.1 + 4275 0.68 0.21739
Target:  5'- gGGCGGcugcgcuGCCACgaGCaCGGacCGGCGGCc -3'
miRNA:   3'- gCCGCC-------CGGUGg-CG-GCCauGCCGCCG- -5'
23436 3' -65.8 NC_005259.1 + 4482 0.71 0.134274
Target:  5'- uCGGCGGuggaccauggugaucGCCACCgcGCCGGgagugGCGcugcGCGGCa -3'
miRNA:   3'- -GCCGCC---------------CGGUGG--CGGCCa----UGC----CGCCG- -5'
23436 3' -65.8 NC_005259.1 + 4602 0.66 0.316061
Target:  5'- -cGCcauaGGCaCGCUGUCGGgcCGGUGGCg -3'
miRNA:   3'- gcCGc---CCG-GUGGCGGCCauGCCGCCG- -5'
23436 3' -65.8 NC_005259.1 + 5711 0.75 0.067881
Target:  5'- -cGCcaaGGCCAgCGCCGG-ACGGCGGCc -3'
miRNA:   3'- gcCGc--CCGGUgGCGGCCaUGCCGCCG- -5'
23436 3' -65.8 NC_005259.1 + 7428 0.66 0.323191
Target:  5'- uCGGCGGuGCC-CgCGCCGc-AUGGCaGCg -3'
miRNA:   3'- -GCCGCC-CGGuG-GCGGCcaUGCCGcCG- -5'
23436 3' -65.8 NC_005259.1 + 8334 0.74 0.082815
Target:  5'- aCGGCGaucagccggucacGCUGCUGCCGGUAucgcuCGGCGGCg -3'
miRNA:   3'- -GCCGCc------------CGGUGGCGGCCAU-----GCCGCCG- -5'
23436 3' -65.8 NC_005259.1 + 8947 0.71 0.152278
Target:  5'- aCGGUGGGCgCGCCguggacgggcaccguGCCGGgACGuaggugccaGCGGCg -3'
miRNA:   3'- -GCCGCCCG-GUGG---------------CGGCCaUGC---------CGCCG- -5'
23436 3' -65.8 NC_005259.1 + 9106 0.68 0.245435
Target:  5'- gGGCGGGgaacucaaucCCACgCGCCccGGUACgGGCaGCc -3'
miRNA:   3'- gCCGCCC----------GGUG-GCGG--CCAUG-CCGcCG- -5'
23436 3' -65.8 NC_005259.1 + 10773 0.67 0.263295
Target:  5'- gGGCGGGUCAUCGa-GGUG-GGCcGCg -3'
miRNA:   3'- gCCGCCCGGUGGCggCCAUgCCGcCG- -5'
23436 3' -65.8 NC_005259.1 + 12015 0.66 0.30905
Target:  5'- uCGGU-GGCC-UUGUaCGGUGCgGGCGGCa -3'
miRNA:   3'- -GCCGcCCGGuGGCG-GCCAUG-CCGCCG- -5'
23436 3' -65.8 NC_005259.1 + 13086 0.71 0.132922
Target:  5'- cCGGCcauccGGuGCCACCGaccCCGGcccgcuCGGCGGCu -3'
miRNA:   3'- -GCCG-----CC-CGGUGGC---GGCCau----GCCGCCG- -5'
23436 3' -65.8 NC_005259.1 + 13221 0.67 0.268856
Target:  5'- gCGGUGGGCCucgACCgGCCaccGUGagggccgagcaccCGGCGGUa -3'
miRNA:   3'- -GCCGCCCGG---UGG-CGGc--CAU-------------GCCGCCG- -5'
23436 3' -65.8 NC_005259.1 + 13419 0.73 0.105637
Target:  5'- uGGCcgGGGUCGCCGCCGGggccGCGcuaGGCg -3'
miRNA:   3'- gCCG--CCCGGUGGCGGCCa---UGCcg-CCG- -5'
23436 3' -65.8 NC_005259.1 + 16226 0.68 0.245435
Target:  5'- aGGUGGGCCgaacgcACC-CCGGUGCuGC-GCa -3'
miRNA:   3'- gCCGCCCGG------UGGcGGCCAUGcCGcCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.