miRNA display CGI


Results 21 - 40 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23436 3' -65.8 NC_005259.1 + 17340 0.66 0.33044
Target:  5'- cCGGUcaacGUCGCCGUCgaGGU-CGGCGGCu -3'
miRNA:   3'- -GCCGcc--CGGUGGCGG--CCAuGCCGCCG- -5'
23436 3' -65.8 NC_005259.1 + 23258 0.68 0.245435
Target:  5'- gGGCGguGGCCACCaugagcaccaaGaCCGGgcGCGGUGGUu -3'
miRNA:   3'- gCCGC--CCGGUGG-----------C-GGCCa-UGCCGCCG- -5'
23436 3' -65.8 NC_005259.1 + 24339 0.67 0.288733
Target:  5'- aCGcGCuGGCCuACCGCCGGgugcucGCacaccgaggucuGGUGGCg -3'
miRNA:   3'- -GC-CGcCCGG-UGGCGGCCa-----UG------------CCGCCG- -5'
23436 3' -65.8 NC_005259.1 + 25424 0.66 0.33044
Target:  5'- aCGGCGaGGUCgaggaaugcgaGCCGUaugaGGU-CGGCGaGCg -3'
miRNA:   3'- -GCCGC-CCGG-----------UGGCGg---CCAuGCCGC-CG- -5'
23436 3' -65.8 NC_005259.1 + 25906 0.72 0.123172
Target:  5'- aGGauGGCCgccugagccgccGCCGCCGGUcCGGUGaGCg -3'
miRNA:   3'- gCCgcCCGG------------UGGCGGCCAuGCCGC-CG- -5'
23436 3' -65.8 NC_005259.1 + 26415 0.68 0.223198
Target:  5'- gCGGCGGuGCCgccguagaacgcACCGCCGa-GCGGgCGGg -3'
miRNA:   3'- -GCCGCC-CGG------------UGGCGGCcaUGCC-GCCg -5'
23436 3' -65.8 NC_005259.1 + 26799 0.7 0.179388
Target:  5'- -aGCGccGCCGCCcgguugGCCGGUAcCGGCGGUg -3'
miRNA:   3'- gcCGCc-CGGUGG------CGGCCAU-GCCGCCG- -5'
23436 3' -65.8 NC_005259.1 + 27071 0.69 0.193073
Target:  5'- aCGGCGa--CAUCGCCGacauucUGCGGCGGCu -3'
miRNA:   3'- -GCCGCccgGUGGCGGCc-----AUGCCGCCG- -5'
23436 3' -65.8 NC_005259.1 + 27107 0.66 0.30697
Target:  5'- gCGGUGGGCUGugucaugcggaucuCCuaCGGUuugAgGGCGGCu -3'
miRNA:   3'- -GCCGCCCGGU--------------GGcgGCCA---UgCCGCCG- -5'
23436 3' -65.8 NC_005259.1 + 27367 0.68 0.223198
Target:  5'- gGGCuuGGuGCC-CgGCaCGGUGacCGGCGGCg -3'
miRNA:   3'- gCCG--CC-CGGuGgCG-GCCAU--GCCGCCG- -5'
23436 3' -65.8 NC_005259.1 + 28219 0.68 0.212735
Target:  5'- aCGGuCGugccGCCACCGUCGG--CGGCGGg -3'
miRNA:   3'- -GCC-GCc---CGGUGGCGGCCauGCCGCCg -5'
23436 3' -65.8 NC_005259.1 + 29112 0.68 0.223198
Target:  5'- -uGCGGaCC-CUGCUGGUgagcGCGGCGGUa -3'
miRNA:   3'- gcCGCCcGGuGGCGGCCA----UGCCGCCG- -5'
23436 3' -65.8 NC_005259.1 + 29947 0.72 0.111205
Target:  5'- gCGGCccGGUCGCgGCUGGUGgGGCGGg -3'
miRNA:   3'- -GCCGc-CCGGUGgCGGCCAUgCCGCCg -5'
23436 3' -65.8 NC_005259.1 + 29999 0.74 0.082384
Target:  5'- aCGGUGGucaccacgacaagguGaCCACCGCCGGgGCGGUGGg -3'
miRNA:   3'- -GCCGCC---------------C-GGUGGCGGCCaUGCCGCCg -5'
23436 3' -65.8 NC_005259.1 + 31249 0.76 0.057958
Target:  5'- gCGGCGGuGCCGCCccacacGCCGcaguagGCGGUGGCg -3'
miRNA:   3'- -GCCGCC-CGGUGG------CGGCca----UGCCGCCG- -5'
23436 3' -65.8 NC_005259.1 + 32353 0.66 0.295387
Target:  5'- -cGCGaGGUUgaugACCGCCGuGUAgGGCGGg -3'
miRNA:   3'- gcCGC-CCGG----UGGCGGC-CAUgCCGCCg -5'
23436 3' -65.8 NC_005259.1 + 32906 0.68 0.217913
Target:  5'- gGGUGaGCCAcccggcCCGCuCGGgcGCGGCGGUa -3'
miRNA:   3'- gCCGCcCGGU------GGCG-GCCa-UGCCGCCG- -5'
23436 3' -65.8 NC_005259.1 + 33591 0.7 0.170749
Target:  5'- -cGCGGGCCACCGa-GGcGCGGuCGaGCu -3'
miRNA:   3'- gcCGCCCGGUGGCggCCaUGCC-GC-CG- -5'
23436 3' -65.8 NC_005259.1 + 34341 0.71 0.150761
Target:  5'- gCGuuGGGguucgacgugacCCACCGCCGGUAuCGGCGcGUa -3'
miRNA:   3'- -GCcgCCC------------GGUGGCGGCCAU-GCCGC-CG- -5'
23436 3' -65.8 NC_005259.1 + 35635 0.71 0.136326
Target:  5'- --uCGGGCCGCCGCCGcUGCcGCuGGCg -3'
miRNA:   3'- gccGCCCGGUGGCGGCcAUGcCG-CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.