Results 21 - 40 of 90 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23436 | 3' | -65.8 | NC_005259.1 | + | 24339 | 0.67 | 0.288733 |
Target: 5'- aCGcGCuGGCCuACCGCCGGgugcucGCacaccgaggucuGGUGGCg -3' miRNA: 3'- -GC-CGcCCGG-UGGCGGCCa-----UG------------CCGCCG- -5' |
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23436 | 3' | -65.8 | NC_005259.1 | + | 47674 | 0.67 | 0.27578 |
Target: 5'- uGGCcuuGGCCACCuuuugcauGcCCGGUugGaugcGCGGCa -3' miRNA: 3'- gCCGc--CCGGUGG--------C-GGCCAugC----CGCCG- -5' |
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23436 | 3' | -65.8 | NC_005259.1 | + | 67711 | 0.67 | 0.288733 |
Target: 5'- uCGGCGGGCauacCCGucagccucgauCCGaUAcCGGCGGCc -3' miRNA: 3'- -GCCGCCCGgu--GGC-----------GGCcAU-GCCGCCG- -5' |
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23436 | 3' | -65.8 | NC_005259.1 | + | 56258 | 0.67 | 0.263295 |
Target: 5'- uCGGCGGccuugagcGCCGCCGCCcGGccCGuauCGGCa -3' miRNA: 3'- -GCCGCC--------CGGUGGCGG-CCauGCc--GCCG- -5' |
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23436 | 3' | -65.8 | NC_005259.1 | + | 3105 | 0.67 | 0.28155 |
Target: 5'- uGaGCGGGCggccauugcgcggCACCGUgGGcaGCGGaCGGCa -3' miRNA: 3'- gC-CGCCCG-------------GUGGCGgCCa-UGCC-GCCG- -5' |
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23436 | 3' | -65.8 | NC_005259.1 | + | 61053 | 0.67 | 0.269479 |
Target: 5'- gGGCGGcUCACCuuguGCCGGgcauCGGCauaGGCg -3' miRNA: 3'- gCCGCCcGGUGG----CGGCCau--GCCG---CCG- -5' |
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23436 | 3' | -65.8 | NC_005259.1 | + | 45308 | 0.67 | 0.262683 |
Target: 5'- cCGGUGacgccgaGGCCGCCGCCGaacUGC-GUGGCc -3' miRNA: 3'- -GCCGC-------CCGGUGGCGGCc--AUGcCGCCG- -5' |
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23436 | 3' | -65.8 | NC_005259.1 | + | 63573 | 0.67 | 0.251864 |
Target: 5'- aCGaGCGGGauauaCGCCGCCuGGcuguucucguccuccAUGGCGGCc -3' miRNA: 3'- -GC-CGCCCg----GUGGCGG-CCa--------------UGCCGCCG- -5' |
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23436 | 3' | -65.8 | NC_005259.1 | + | 10773 | 0.67 | 0.263295 |
Target: 5'- gGGCGGGUCAUCGa-GGUG-GGCcGCg -3' miRNA: 3'- gCCGCCCGGUGGCggCCAUgCCGcCG- -5' |
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23436 | 3' | -65.8 | NC_005259.1 | + | 65110 | 0.67 | 0.263295 |
Target: 5'- aCGGUcaGuGcGUCACCGUCGGcgcacCGGCGGCc -3' miRNA: 3'- -GCCG--C-C-CGGUGGCGGCCau---GCCGCCG- -5' |
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23436 | 3' | -65.8 | NC_005259.1 | + | 61594 | 0.67 | 0.263295 |
Target: 5'- gCGGUGGGCCGgUGg-GGU-CGGCGGg -3' miRNA: 3'- -GCCGCCCGGUgGCggCCAuGCCGCCg -5' |
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23436 | 3' | -65.8 | NC_005259.1 | + | 13221 | 0.67 | 0.268856 |
Target: 5'- gCGGUGGGCCucgACCgGCCaccGUGagggccgagcaccCGGCGGUa -3' miRNA: 3'- -GCCGCCCGG---UGG-CGGc--CAU-------------GCCGCCG- -5' |
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23436 | 3' | -65.8 | NC_005259.1 | + | 40457 | 0.67 | 0.263295 |
Target: 5'- cCGGUGuGGUugacgUACUGCCGGgcCGcGCGGUu -3' miRNA: 3'- -GCCGC-CCG-----GUGGCGGCCauGC-CGCCG- -5' |
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23436 | 3' | -65.8 | NC_005259.1 | + | 42473 | 0.68 | 0.230779 |
Target: 5'- aCGGCGaGGCC-CgGCCcGUAgagccgugacccgucCGGCGGUg -3' miRNA: 3'- -GCCGC-CCGGuGgCGGcCAU---------------GCCGCCG- -5' |
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23436 | 3' | -65.8 | NC_005259.1 | + | 45524 | 0.68 | 0.228591 |
Target: 5'- cCGGUGuuGGCCGCCGUgGcUGCGaGCGGg -3' miRNA: 3'- -GCCGC--CCGGUGGCGgCcAUGC-CGCCg -5' |
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23436 | 3' | -65.8 | NC_005259.1 | + | 54158 | 0.68 | 0.217913 |
Target: 5'- cCGGCgauGGGCaUACCGCaacuguugaucuUGGUggcccucagGCGGCGGCc -3' miRNA: 3'- -GCCG---CCCG-GUGGCG------------GCCA---------UGCCGCCG- -5' |
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23436 | 3' | -65.8 | NC_005259.1 | + | 27367 | 0.68 | 0.223198 |
Target: 5'- gGGCuuGGuGCC-CgGCaCGGUGacCGGCGGCg -3' miRNA: 3'- gCCG--CC-CGGuGgCG-GCCAU--GCCGCCG- -5' |
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23436 | 3' | -65.8 | NC_005259.1 | + | 26415 | 0.68 | 0.223198 |
Target: 5'- gCGGCGGuGCCgccguagaacgcACCGCCGa-GCGGgCGGg -3' miRNA: 3'- -GCCGCC-CGG------------UGGCGGCcaUGCC-GCCg -5' |
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23436 | 3' | -65.8 | NC_005259.1 | + | 50256 | 0.68 | 0.228591 |
Target: 5'- uGGCcaacGGGCUACuCGCUGucguCGGUGGCg -3' miRNA: 3'- gCCG----CCCGGUG-GCGGCcau-GCCGCCG- -5' |
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23436 | 3' | -65.8 | NC_005259.1 | + | 29112 | 0.68 | 0.223198 |
Target: 5'- -uGCGGaCC-CUGCUGGUgagcGCGGCGGUa -3' miRNA: 3'- gcCGCCcGGuGGCGGCCA----UGCCGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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