miRNA display CGI


Results 21 - 40 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23436 3' -65.8 NC_005259.1 + 4482 0.71 0.134274
Target:  5'- uCGGCGGuggaccauggugaucGCCACCgcGCCGGgagugGCGcugcGCGGCa -3'
miRNA:   3'- -GCCGCC---------------CGGUGG--CGGCCa----UGC----CGCCG- -5'
23436 3' -65.8 NC_005259.1 + 13086 0.71 0.132922
Target:  5'- cCGGCcauccGGuGCCACCGaccCCGGcccgcuCGGCGGCu -3'
miRNA:   3'- -GCCG-----CC-CGGUGGC---GGCCau----GCCGCCG- -5'
23436 3' -65.8 NC_005259.1 + 35635 0.71 0.136326
Target:  5'- --uCGGGCCGCCGCCGcUGCcGCuGGCg -3'
miRNA:   3'- gccGCCCGGUGGCGGCcAUGcCG-CCG- -5'
23436 3' -65.8 NC_005259.1 + 34341 0.71 0.150761
Target:  5'- gCGuuGGGguucgacgugacCCACCGCCGGUAuCGGCGcGUa -3'
miRNA:   3'- -GCcgCCC------------GGUGGCGGCCAU-GCCGC-CG- -5'
23436 3' -65.8 NC_005259.1 + 8947 0.71 0.152278
Target:  5'- aCGGUGGGCgCGCCguggacgggcaccguGCCGGgACGuaggugccaGCGGCg -3'
miRNA:   3'- -GCCGCCCG-GUGG---------------CGGCCaUGC---------CGCCG- -5'
23436 3' -65.8 NC_005259.1 + 58969 0.7 0.158487
Target:  5'- aGGuCGGGCaGCuCGUCGGcgACGGCGaGCu -3'
miRNA:   3'- gCC-GCCCGgUG-GCGGCCa-UGCCGC-CG- -5'
23436 3' -65.8 NC_005259.1 + 3275 0.7 0.162484
Target:  5'- gGGUGGuuucccgucGCCGCCucGCCGGUcccuCGGCGaGCg -3'
miRNA:   3'- gCCGCC---------CGGUGG--CGGCCAu---GCCGC-CG- -5'
23436 3' -65.8 NC_005259.1 + 37534 0.7 0.162484
Target:  5'- uCGuCGGGCCGCCGuuGuUGCGuGUGGUg -3'
miRNA:   3'- -GCcGCCCGGUGGCggCcAUGC-CGCCG- -5'
23436 3' -65.8 NC_005259.1 + 67216 0.7 0.16657
Target:  5'- uCGGCgGGGUCGauGCCGaccACGGCGGUg -3'
miRNA:   3'- -GCCG-CCCGGUggCGGCca-UGCCGCCG- -5'
23436 3' -65.8 NC_005259.1 + 33591 0.7 0.170749
Target:  5'- -cGCGGGCCACCGa-GGcGCGGuCGaGCu -3'
miRNA:   3'- gcCGCCCGGUGGCggCCaUGCC-GC-CG- -5'
23436 3' -65.8 NC_005259.1 + 26799 0.7 0.179388
Target:  5'- -aGCGccGCCGCCcgguugGCCGGUAcCGGCGGUg -3'
miRNA:   3'- gcCGCc-CGGUGG------CGGCCAU-GCCGCCG- -5'
23436 3' -65.8 NC_005259.1 + 51118 0.7 0.179388
Target:  5'- cCGGCaGGCCaucagaucACCGUCGG---GGCGGCc -3'
miRNA:   3'- -GCCGcCCGG--------UGGCGGCCaugCCGCCG- -5'
23436 3' -65.8 NC_005259.1 + 61764 0.69 0.185664
Target:  5'- gCGGCGGcaaUCACCGCCGcauucugcacacCGGCGGCc -3'
miRNA:   3'- -GCCGCCc--GGUGGCGGCcau---------GCCGCCG- -5'
23436 3' -65.8 NC_005259.1 + 164 0.69 0.183851
Target:  5'- cCGGCGGGguccggcaCCACCGaCuCGGUcaucuaugGCGcGUGGCg -3'
miRNA:   3'- -GCCGCCC--------GGUGGC-G-GCCA--------UGC-CGCCG- -5'
23436 3' -65.8 NC_005259.1 + 55029 0.69 0.183401
Target:  5'- uCGGCacGGGCUGCCGa-GGUGCuugccucGGUGGCa -3'
miRNA:   3'- -GCCG--CCCGGUGGCggCCAUG-------CCGCCG- -5'
23436 3' -65.8 NC_005259.1 + 27071 0.69 0.193073
Target:  5'- aCGGCGa--CAUCGCCGacauucUGCGGCGGCu -3'
miRNA:   3'- -GCCGCccgGUGGCGGCc-----AUGCCGCCG- -5'
23436 3' -65.8 NC_005259.1 + 37467 0.69 0.202206
Target:  5'- uGGCuGGCCacGCCGCCGuUGgcugacccaccccCGGCGGUg -3'
miRNA:   3'- gCCGcCCGG--UGGCGGCcAU-------------GCCGCCG- -5'
23436 3' -65.8 NC_005259.1 + 50256 0.68 0.228591
Target:  5'- uGGCcaacGGGCUACuCGCUGucguCGGUGGCg -3'
miRNA:   3'- gCCG----CCCGGUG-GCGGCcau-GCCGCCG- -5'
23436 3' -65.8 NC_005259.1 + 29112 0.68 0.223198
Target:  5'- -uGCGGaCC-CUGCUGGUgagcGCGGCGGUa -3'
miRNA:   3'- gcCGCCcGGuGGCGGCCA----UGCCGCCG- -5'
23436 3' -65.8 NC_005259.1 + 45524 0.68 0.228591
Target:  5'- cCGGUGuuGGCCGCCGUgGcUGCGaGCGGg -3'
miRNA:   3'- -GCCGC--CCGGUGGCGgCcAUGC-CGCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.