miRNA display CGI


Results 21 - 40 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23436 3' -65.8 NC_005259.1 + 16226 0.68 0.245435
Target:  5'- aGGUGGGCCgaacgcACC-CCGGUGCuGC-GCa -3'
miRNA:   3'- gCCGCCCGG------UGGcGGCCAUGcCGcCG- -5'
23436 3' -65.8 NC_005259.1 + 54493 0.68 0.223198
Target:  5'- ---aGGGUCAUCGgCGGgcAUGGCGGCg -3'
miRNA:   3'- gccgCCCGGUGGCgGCCa-UGCCGCCG- -5'
23436 3' -65.8 NC_005259.1 + 27367 0.68 0.223198
Target:  5'- gGGCuuGGuGCC-CgGCaCGGUGacCGGCGGCg -3'
miRNA:   3'- gCCG--CC-CGGuGgCG-GCCAU--GCCGCCG- -5'
23436 3' -65.8 NC_005259.1 + 29112 0.68 0.223198
Target:  5'- -uGCGGaCC-CUGCUGGUgagcGCGGCGGUa -3'
miRNA:   3'- gcCGCCcGGuGGCGGCCA----UGCCGCCG- -5'
23436 3' -65.8 NC_005259.1 + 63717 0.68 0.228591
Target:  5'- gGGaucgGGGCCugCgcaGCCGGUAgcgacaucuCGGCGGg -3'
miRNA:   3'- gCCg---CCCGGugG---CGGCCAU---------GCCGCCg -5'
23436 3' -65.8 NC_005259.1 + 45524 0.68 0.228591
Target:  5'- cCGGUGuuGGCCGCCGUgGcUGCGaGCGGg -3'
miRNA:   3'- -GCCGC--CCGGUGGCGgCcAUGC-CGCCg -5'
23436 3' -65.8 NC_005259.1 + 50256 0.68 0.228591
Target:  5'- uGGCcaacGGGCUACuCGCUGucguCGGUGGCg -3'
miRNA:   3'- gCCG----CCCGGUG-GCGGCcau-GCCGCCG- -5'
23436 3' -65.8 NC_005259.1 + 42473 0.68 0.230779
Target:  5'- aCGGCGaGGCC-CgGCCcGUAgagccgugacccgucCGGCGGUg -3'
miRNA:   3'- -GCCGC-CCGGuGgCGGcCAU---------------GCCGCCG- -5'
23436 3' -65.8 NC_005259.1 + 58918 0.68 0.239709
Target:  5'- uCGGCGGucuuGUCGuCgGCgGGcGCGGUGGCa -3'
miRNA:   3'- -GCCGCC----CGGU-GgCGgCCaUGCCGCCG- -5'
23436 3' -65.8 NC_005259.1 + 9106 0.68 0.245435
Target:  5'- gGGCGGGgaacucaaucCCACgCGCCccGGUACgGGCaGCc -3'
miRNA:   3'- gCCGCCC----------GGUG-GCGG--CCAUG-CCGcCG- -5'
23436 3' -65.8 NC_005259.1 + 65857 0.67 0.282197
Target:  5'- uGGU-GGCCuCCGucugccCCGGUGgGGCGGUc -3'
miRNA:   3'- gCCGcCCGGuGGC------GGCCAUgCCGCCG- -5'
23436 3' -65.8 NC_005259.1 + 23258 0.68 0.245435
Target:  5'- gGGCGguGGCCACCaugagcaccaaGaCCGGgcGCGGUGGUu -3'
miRNA:   3'- gCCGC--CCGGUGG-----------C-GGCCa-UGCCGCCG- -5'
23436 3' -65.8 NC_005259.1 + 63573 0.67 0.251864
Target:  5'- aCGaGCGGGauauaCGCCGCCuGGcuguucucguccuccAUGGCGGCc -3'
miRNA:   3'- -GC-CGCCCg----GUGGCGG-CCa--------------UGCCGCCG- -5'
23436 3' -65.8 NC_005259.1 + 45308 0.67 0.262683
Target:  5'- cCGGUGacgccgaGGCCGCCGCCGaacUGC-GUGGCc -3'
miRNA:   3'- -GCCGC-------CCGGUGGCGGCc--AUGcCGCCG- -5'
23436 3' -65.8 NC_005259.1 + 10773 0.67 0.263295
Target:  5'- gGGCGGGUCAUCGa-GGUG-GGCcGCg -3'
miRNA:   3'- gCCGCCCGGUGGCggCCAUgCCGcCG- -5'
23436 3' -65.8 NC_005259.1 + 65110 0.67 0.263295
Target:  5'- aCGGUcaGuGcGUCACCGUCGGcgcacCGGCGGCc -3'
miRNA:   3'- -GCCG--C-C-CGGUGGCGGCCau---GCCGCCG- -5'
23436 3' -65.8 NC_005259.1 + 56258 0.67 0.263295
Target:  5'- uCGGCGGccuugagcGCCGCCGCCcGGccCGuauCGGCa -3'
miRNA:   3'- -GCCGCC--------CGGUGGCGG-CCauGCc--GCCG- -5'
23436 3' -65.8 NC_005259.1 + 40457 0.67 0.263295
Target:  5'- cCGGUGuGGUugacgUACUGCCGGgcCGcGCGGUu -3'
miRNA:   3'- -GCCGC-CCG-----GUGGCGGCCauGC-CGCCG- -5'
23436 3' -65.8 NC_005259.1 + 61594 0.67 0.263295
Target:  5'- gCGGUGGGCCGgUGg-GGU-CGGCGGg -3'
miRNA:   3'- -GCCGCCCGGUgGCggCCAuGCCGCCg -5'
23436 3' -65.8 NC_005259.1 + 13221 0.67 0.268856
Target:  5'- gCGGUGGGCCucgACCgGCCaccGUGagggccgagcaccCGGCGGUa -3'
miRNA:   3'- -GCCGCCCGG---UGG-CGGc--CAU-------------GCCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.